RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 COX7CP15954 63 aa11.41□□□□□ -0.58
SHMT2-232ENST00000557487 FHL2Q14192 279 aa11.41□□□□□ -0.58
SHMT2-232ENST00000557487 HIVEP2P31629 2446 aa11.4□□□□□ -0.58
SHMT2-232ENST00000557487 IGLV4-60A0A075B6I1 120 aa11.4□□□□□ -0.58
SHMT2-232ENST00000557487 LOC100131303A0A0U1RQF7 123 aa11.4□□□□□ -0.58
SHMT2-232ENST00000557487 PAX4O43316 350 aa11.39□□□□□ -0.59
SHMT2-232ENST00000557487 CSNK1G2-AS1Q8NCQ2 148 aa11.39□□□□□ -0.59
SHMT2-232ENST00000557487 ZANQ9Y493 2812 aa11.39□□□□□ -0.59
SHMT2-232ENST00000557487 MTORP42345 2549 aa11.39□□□□□ -0.59
SHMT2-232ENST00000557487 FN1P02751 2386 aaKnown RBP11.39□□□□□ -0.59
SHMT2-232ENST00000557487 LINC00959A0A1B0GUT2 108 aa11.38□□□□□ -0.59
SHMT2-232ENST00000557487 DNAJC9-AS1A6NH13 148 aa11.38□□□□□ -0.59
SHMT2-232ENST00000557487 ORMDL1Q9P0S3 153 aa11.38□□□□□ -0.59
SHMT2-232ENST00000557487 A0A1W2PRX2 142 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 LECT2O14960 151 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 CRYGAP11844 174 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 C6orf226Q5I0X4 101 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 Q8IZM0 81 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 LINC00167Q96N53 147 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 C14orf132Q9NPU4 83 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 IGKV3OR2-268A0A0C4DH90 116 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 A0A1B0GUV1 79 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 IGLV1-51P01701 117 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 C19orf73Q9NVV2 129 aa11.37□□□□□ -0.59
SHMT2-232ENST00000557487 RPL18AQ02543 176 aaKnown RBP11.36□□□□□ -0.59
SHMT2-232ENST00000557487 SS18Q15532 418 aa11.36□□□□□ -0.59
SHMT2-232ENST00000557487 S100A7L2Q5SY68 101 aa11.36□□□□□ -0.59
SHMT2-232ENST00000557487 TLN2Q9Y4G6 2542 aa11.35□□□□□ -0.59
SHMT2-232ENST00000557487 PFN2P35080 140 aa11.35□□□□□ -0.59
SHMT2-232ENST00000557487 OR13C6PQ8NH95 151 aa11.35□□□□□ -0.59
SHMT2-232ENST00000557487 KIR2DL5BQ8NHK3 375 aa11.35□□□□□ -0.59
SHMT2-232ENST00000557487 C2orf48Q96LS8 159 aa11.35□□□□□ -0.59
SHMT2-232ENST00000557487 NSD1Q96L73 2696 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-232ENST00000557487 JMJD7-PLA2G4BH0Y9G9 81 aa11.35□□□□□ -0.59
SHMT2-232ENST00000557487 NDUFC2O95298 119 aa11.34□□□□□ -0.59
SHMT2-232ENST00000557487 RPL35AP18077 110 aaKnown RBP11.34□□□□□ -0.59
SHMT2-232ENST00000557487 C16orf95Q9H693 158 aa11.34□□□□□ -0.59
SHMT2-232ENST00000557487 ANK3Q12955 4377 aaKnown RBP11.33□□□□□ -0.6
SHMT2-232ENST00000557487 COX17Q14061 63 aa11.33□□□□□ -0.6
SHMT2-232ENST00000557487 KRTAP21-3Q3LHN1 58 aa11.33□□□□□ -0.6
SHMT2-232ENST00000557487 ATP5EP2Q5VTU8 51 aa11.33□□□□□ -0.6
SHMT2-232ENST00000557487 LINC00612Q8N6U2 182 aa11.33□□□□□ -0.6
SHMT2-232ENST00000557487 LINC00846Q9NV44 126 aa11.33□□□□□ -0.6
SHMT2-232ENST00000557487 CCKP06307 115 aa11.32□□□□□ -0.6
SHMT2-232ENST00000557487 C9orf129Q5T035 196 aaKnown RBP11.31□□□□□ -0.6
SHMT2-232ENST00000557487 SONP18583 2426 aaKnown RBP11.3□□□□□ -0.6
SHMT2-232ENST00000557487 TMEM256-PLSCR3K7ERE1 68 aa11.3□□□□□ -0.6
SHMT2-232ENST00000557487 SERP2Q8N6R1 65 aa11.29□□□□□ -0.6
SHMT2-232ENST00000557487 NCR3O14931 201 aa11.29□□□□□ -0.6
SHMT2-232ENST00000557487 C3orf56Q8N813 242 aa11.29□□□□□ -0.6
SHMT2-232ENST00000557487 RPS28P62857 69 aaKnown RBP11.28□□□□□ -0.6
SHMT2-232ENST00000557487 MUC7Q8TAX7 377 aa11.28□□□□□ -0.6
SHMT2-232ENST00000557487 WFDC10AQ9H1F0 79 aa11.28□□□□□ -0.6
SHMT2-232ENST00000557487 J3KT08 172 aa11.27□□□□□ -0.61
SHMT2-232ENST00000557487 XCL1P47992 114 aa11.27□□□□□ -0.61
SHMT2-232ENST00000557487 Q8N814 137 aa11.27□□□□□ -0.61
SHMT2-232ENST00000557487 LINC01006Q8NI28 216 aa11.27□□□□□ -0.61
SHMT2-232ENST00000557487 ESM1Q9NQ30 184 aa11.27□□□□□ -0.61
SHMT2-232ENST00000557487 NF1P21359 2839 aa11.26□□□□□ -0.61
SHMT2-232ENST00000557487 IGKV3D-7A0A0C4DH55 119 aa11.26□□□□□ -0.61
SHMT2-232ENST00000557487 SMIM9A6NGZ8 99 aa11.26□□□□□ -0.61
SHMT2-232ENST00000557487 RNASE1P07998 156 aaKnown RBP11.26□□□□□ -0.61
SHMT2-232ENST00000557487 GYPEP15421 78 aa11.26□□□□□ -0.61
SHMT2-232ENST00000557487 SETD2Q9BYW2 2564 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-232ENST00000557487 C2CD3Q4AC94 2353 aa11.26□□□□□ -0.61
SHMT2-232ENST00000557487 IGHV4-28A0A0C4DH34 117 aa11.25□□□□□ -0.61
SHMT2-232ENST00000557487 PRO0255Q9UI72 69 aa11.25□□□□□ -0.61
SHMT2-232ENST00000557487 CFAP161Q6P656 301 aa11.25□□□□□ -0.61
SHMT2-232ENST00000557487 CD164L2Q6UWJ8 174 aa11.25□□□□□ -0.61
SHMT2-232ENST00000557487 TRBV10-3A0A0K0K1G6 114 aa11.24□□□□□ -0.61
SHMT2-232ENST00000557487 SLPIP03973 132 aa11.24□□□□□ -0.61
SHMT2-232ENST00000557487 NIPBLQ6KC79 2804 aaeCLIP11.23□□□□□ -0.61
SHMT2-232ENST00000557487 USP17L23D6RBM5 183 aa11.23□□□□□ -0.61
SHMT2-232ENST00000557487 NANOS2P60321 138 aaKnown RBP11.23□□□□□ -0.61
SHMT2-232ENST00000557487 TMEM258P61165 79 aa11.23□□□□□ -0.61
SHMT2-232ENST00000557487 DEFB130BP0DP73 79 aa11.23□□□□□ -0.61
SHMT2-232ENST00000557487 DEFB130AP0DP74 79 aa11.23□□□□□ -0.61
SHMT2-232ENST00000557487 LYPD5Q6UWN5 251 aa11.23□□□□□ -0.61
SHMT2-232ENST00000557487 C11orf68Q9H3H3 251 aaKnown RBP11.23□□□□□ -0.61
SHMT2-232ENST00000557487 KIAA0087Q14695 138 aa11.22□□□□□ -0.61
SHMT2-232ENST00000557487 hADV29S1A0JD25 119 aa11.21□□□□□ -0.61
SHMT2-232ENST00000557487 H3BQ85 93 aa11.21□□□□□ -0.61
SHMT2-232ENST00000557487 HILS1P60008 231 aa11.21□□□□□ -0.61
SHMT2-232ENST00000557487 MXRA5Q9NR99 2828 aa11.2□□□□□ -0.62
SHMT2-232ENST00000557487 UPK3BQ9BT76 320 aa11.2□□□□□ -0.62
SHMT2-232ENST00000557487 LYRM9A8MSI8 78 aa11.19□□□□□ -0.62
SHMT2-232ENST00000557487 UBL5Q9BZL1 73 aa11.18□□□□□ -0.62
SHMT2-232ENST00000557487 CHCHD10Q8WYQ3 142 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-232ENST00000557487 BCE1O60756 84 aa11.17□□□□□ -0.62
SHMT2-232ENST00000557487 JMJD1CQ15652 2540 aa11.16□□□□□ -0.62
SHMT2-232ENST00000557487 A0A087WVE0 104 aa11.16□□□□□ -0.62
SHMT2-232ENST00000557487 LINC00575Q6W349 94 aa11.16□□□□□ -0.62
SHMT2-232ENST00000557487 X6R8D5 127 aa11.16□□□□□ -0.62
SHMT2-232ENST00000557487 LINC00269Q8N2A0 174 aa11.15□□□□□ -0.62
SHMT2-232ENST00000557487 LOC110117498A0A087WWA1 95 aa11.15□□□□□ -0.62
SHMT2-232ENST00000557487 NDUFC2-KCTD14E9PQ53 114 aa11.15□□□□□ -0.62
SHMT2-232ENST00000557487 KRTAP24-1Q3LI83 254 aa11.15□□□□□ -0.62
SHMT2-232ENST00000557487 CUBNO60494 3623 aa11.14□□□□□ -0.63
SHMT2-232ENST00000557487 ZNF561-AS1K7EIQ3 104 aa11.14□□□□□ -0.63
SHMT2-232ENST00000557487 REG3AQ06141 175 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms