RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 C2orf88Q9BSF0 95 aa5.06□□□□□ -1.6
USP28-203ENST00000537490 VCX2Q9H322 139 aa5.06□□□□□ -1.6
USP28-203ENST00000537490 TOMM7Q9P0U1 55 aa5.06□□□□□ -1.6
USP28-203ENST00000537490 PRSS2P07478 247 aa5.05□□□□□ -1.6
USP28-203ENST00000537490 C6orf226Q5I0X4 101 aa5.05□□□□□ -1.6
USP28-203ENST00000537490 FAM19A3Q7Z5A8 133 aa5.05□□□□□ -1.6
USP28-203ENST00000537490 XAGE1AQ9HD64 81 aa5.05□□□□□ -1.6
USP28-203ENST00000537490 C22orf24Q9Y442 160 aa5.05□□□□□ -1.6
USP28-203ENST00000537490 ZNF861PO60384 105 aa5.04□□□□□ -1.6
USP28-203ENST00000537490 CKS1BP61024 79 aa5.04□□□□□ -1.6
USP28-203ENST00000537490 ORMDL2Q53FV1 153 aa5.04□□□□□ -1.6
USP28-203ENST00000537490 Q8IZM0 81 aa5.04□□□□□ -1.6
USP28-203ENST00000537490 ANAPC16Q96DE5 110 aa5.04□□□□□ -1.6
USP28-203ENST00000537490 ALKBH7Q9BT30 221 aaPredicted RBP5.04□□□□□ -1.6
USP28-203ENST00000537490 CDKN2A-AS1Q9UH64 79 aa5.04□□□□□ -1.6
USP28-203ENST00000537490 MT-ND4LP03901 98 aa5.03□□□□□ -1.6
USP28-203ENST00000537490 NPSP0C0P6 89 aa5.03□□□□□ -1.6
USP28-203ENST00000537490 PNRC1Q12796 327 aaPredicted RBP5.03□□□□□ -1.6
USP28-203ENST00000537490 PRR4Q16378 134 aa5.03□□□□□ -1.6
USP28-203ENST00000537490 CTDSP1Q9GZU7 261 aa5.03□□□□□ -1.6
USP28-203ENST00000537490 CARHSP1Q9Y2V2 147 aaKnown RBP5.03□□□□□ -1.6
USP28-203ENST00000537490 K7EMI3 77 aa5.02□□□□□ -1.61
USP28-203ENST00000537490 NUPR1O60356 82 aa5.02□□□□□ -1.61
USP28-203ENST00000537490 RPL13AP40429 203 aaKnown RBP5.02□□□□□ -1.61
USP28-203ENST00000537490 HERVK_113P63121 156 aa5.02□□□□□ -1.61
USP28-203ENST00000537490 LBHQ53QV2 105 aaPredicted RBP5.02□□□□□ -1.61
USP28-203ENST00000537490 NXT2Q9NPJ8 142 aaKnown RBP5.02□□□□□ -1.61
USP28-203ENST00000537490 F8VRH5 84 aa5.01□□□□□ -1.61
USP28-203ENST00000537490 SEC11AP67812 179 aa5.01□□□□□ -1.61
USP28-203ENST00000537490 KIAA1644Q3SXP7 199 aa5.01□□□□□ -1.61
USP28-203ENST00000537490 TOMM6Q96B49 74 aa5.01□□□□□ -1.61
USP28-203ENST00000537490 TIMM17AQ99595 171 aa5.01□□□□□ -1.61
USP28-203ENST00000537490 GEMIN7Q9H840 131 aaKnown RBP5.01□□□□□ -1.61
USP28-203ENST00000537490 TSPAN13O95857 204 aa5□□□□□ -1.61
USP28-203ENST00000537490 ADCYAP1P18509 176 aa5□□□□□ -1.61
USP28-203ENST00000537490 PAPPA-AS1Q5QFB9 102 aa5□□□□□ -1.61
USP28-203ENST00000537490 MRPL55Q7Z7F7 128 aaKnown RBP5□□□□□ -1.61
USP28-203ENST00000537490 TP73-AS1Q9UF72 201 aa5□□□□□ -1.61
USP28-203ENST00000537490 A0A087X002 238 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 RPL37AP8A6NKH3 93 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 SMIM1B2RUZ4 78 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 BCE1O60756 84 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 G0S2P27469 103 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 CXCL5P42830 114 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 ERASQ7Z444 233 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 LINC00167Q96N53 147 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 SCGB3A1Q96QR1 104 aa4.99□□□□□ -1.61
USP28-203ENST00000537490 IGLV5-45A0A087WSX0 123 aa4.98□□□□□ -1.61
USP28-203ENST00000537490 TINCRA0A1B0GVN0 87 aa4.98□□□□□ -1.61
USP28-203ENST00000537490 GAGE10A6NGK3 116 aa4.98□□□□□ -1.61
USP28-203ENST00000537490 RPL28P46779 137 aaKnown RBP4.98□□□□□ -1.61
USP28-203ENST00000537490 PDZD11Q5EBL8 140 aa4.98□□□□□ -1.61
USP28-203ENST00000537490 COX7B2Q8TF08 81 aa4.98□□□□□ -1.61
USP28-203ENST00000537490 ANAPC11Q9NYG5 84 aa4.98□□□□□ -1.61
USP28-203ENST00000537490 SPINK8P0C7L1 97 aa4.97□□□□□ -1.61
USP28-203ENST00000537490 RAB5BP61020 215 aa4.97□□□□□ -1.61
USP28-203ENST00000537490 RAB14P61106 215 aa4.97□□□□□ -1.61
USP28-203ENST00000537490 TYMSOSQ8TAI1 123 aa4.97□□□□□ -1.61
USP28-203ENST00000537490 KRTAP4-12Q9BQ66 201 aa4.97□□□□□ -1.61
USP28-203ENST00000537490 CST9LQ9H4G1 147 aa4.97□□□□□ -1.61
USP28-203ENST00000537490 IGLV5-37A0A075B6J1 123 aa4.96□□□□□ -1.62
USP28-203ENST00000537490 LINC01546A6NGU7 62 aa4.96□□□□□ -1.62
USP28-203ENST00000537490 CRYGAP11844 174 aa4.96□□□□□ -1.62
USP28-203ENST00000537490 SCO1O75880 301 aa4.95□□□□□ -1.62
USP28-203ENST00000537490 PMVKQ15126 192 aa4.95□□□□□ -1.62
USP28-203ENST00000537490 KRTAP13-2Q52LG2 175 aa4.95□□□□□ -1.62
USP28-203ENST00000537490 CLLU1Q5K131 121 aa4.95□□□□□ -1.62
USP28-203ENST00000537490 KRTAP13-1Q8IUC0 172 aa4.95□□□□□ -1.62
USP28-203ENST00000537490 TRAV9-1A0A075B6T8 112 aa4.94□□□□□ -1.62
USP28-203ENST00000537490 TMEM218A2RU14 115 aa4.94□□□□□ -1.62
USP28-203ENST00000537490 LINC01549A6NIU2 74 aa4.94□□□□□ -1.62
USP28-203ENST00000537490 UBE2AP49459 152 aa4.94□□□□□ -1.62
USP28-203ENST00000537490 NKAPP1Q8N9T2 125 aa4.94□□□□□ -1.62
USP28-203ENST00000537490 GNB1LQ9BYB4 327 aa4.94□□□□□ -1.62
USP28-203ENST00000537490 IGKV2-28A0A075B6P5 120 aa4.93□□□□□ -1.62
USP28-203ENST00000537490 IGKV2D-28P01615 120 aa4.93□□□□□ -1.62
USP28-203ENST00000537490 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
USP28-203ENST00000537490 FA2HQ7L5A8 372 aa4.93□□□□□ -1.62
USP28-203ENST00000537490 IGLV5-39A0A0G2JS06 123 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 H3BRM9 83 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 ATP5LO75964 103 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 IGLC3P0DOY3 106 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 PFN2P35080 140 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 UQCC3Q6UW78 93 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 RETNLBQ9BQ08 111 aa4.92□□□□□ -1.62
USP28-203ENST00000537490 A0A096LNJ9 63 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 VPREB1P12018 145 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 ZNF22P17026 224 aaPredicted RBP4.91□□□□□ -1.62
USP28-203ENST00000537490 S100PP25815 95 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 PRLHP81277 87 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 FABP9Q0Z7S8 132 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 FAM229BQ4G0N7 80 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 URB1-AS1Q96HZ7 61 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 SND1-IT1Q9HBX3 110 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 SMCO4Q9NRQ5 59 aa4.91□□□□□ -1.62
USP28-203ENST00000537490 TMEM238C9JI98 176 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 NDUFA6P56556 154 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 IFITM2Q01629 132 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 COX19Q49B96 90 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 FAM19A1Q7Z5A9 133 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms