RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 IGLV5-39A0A0G2JS06 123 aa8.17□□□□□ -1.1
CLIP1-208ENST00000537004 M0R2N4 97 aa8.17□□□□□ -1.1
CLIP1-208ENST00000537004 SMIM1B2RUZ4 78 aa8.17□□□□□ -1.1
CLIP1-208ENST00000537004 APOMO95445 188 aa8.17□□□□□ -1.1
CLIP1-208ENST00000537004 FOXI1Q12951 378 aa8.17□□□□□ -1.1
CLIP1-208ENST00000537004 IGKV3OR2-268A0A0C4DH90 116 aa8.16□□□□□ -1.1
CLIP1-208ENST00000537004 TMEM262E9PQX1 116 aa8.15□□□□□ -1.1
CLIP1-208ENST00000537004 UBE2DNLQ8IWF7 75 aa8.15□□□□□ -1.1
CLIP1-208ENST00000537004 A0A1B0GUV1 79 aa8.15□□□□□ -1.11
CLIP1-208ENST00000537004 NDUFA1O15239 70 aa8.15□□□□□ -1.11
CLIP1-208ENST00000537004 LITAFQ99732 161 aa8.15□□□□□ -1.11
CLIP1-208ENST00000537004 CDIP1Q9H305 208 aa8.15□□□□□ -1.11
CLIP1-208ENST00000537004 FAT2Q9NYQ8 4349 aa8.14□□□□□ -1.11
CLIP1-208ENST00000537004 TSPAN13O95857 204 aa8.14□□□□□ -1.11
CLIP1-208ENST00000537004 MRPL23Q16540 153 aaKnown RBP8.13□□□□□ -1.11
CLIP1-208ENST00000537004 C15orf53Q8NAA6 179 aa8.13□□□□□ -1.11
CLIP1-208ENST00000537004 PKHD1P08F94 4074 aa8.13□□□□□ -1.11
CLIP1-208ENST00000537004 ADAMTSL4-AS1Q5T5F5 129 aa8.13□□□□□ -1.11
CLIP1-208ENST00000537004 MUSTN1Q8IVN3 82 aa8.13□□□□□ -1.11
CLIP1-208ENST00000537004 LINC00959A0A1B0GUT2 108 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 CFC1BP0CG36 223 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 CFC1P0CG37 223 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 Q9H8V8 135 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 ICOSQ9Y6W8 199 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 A4D1N5 150 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 TIMM17BO60830 172 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 SPANXDQ9BXN6 97 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 PGPEP1Q9NXJ5 209 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 SPANXCQ9NY87 97 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 ERG28Q9UKR5 140 aa8.12□□□□□ -1.11
CLIP1-208ENST00000537004 IGHV3OR16-9A0A0B4J2B5 98 aa8.11□□□□□ -1.11
CLIP1-208ENST00000537004 MIAQ16674 131 aa8.11□□□□□ -1.11
CLIP1-208ENST00000537004 LINC00588Q9Y4M8 146 aa8.11□□□□□ -1.11
CLIP1-208ENST00000537004 PRSS2P07478 247 aa8.1□□□□□ -1.11
CLIP1-208ENST00000537004 SMCPP49901 116 aaPredicted RBP8.1□□□□□ -1.11
CLIP1-208ENST00000537004 LYRM7Q5U5X0 104 aa8.1□□□□□ -1.11
CLIP1-208ENST00000537004 PPDPFLQ8WWR9 84 aa8.1□□□□□ -1.11
CLIP1-208ENST00000537004 ZNF625Q96I27 306 aaPredicted RBP8.1□□□□□ -1.11
CLIP1-208ENST00000537004 CLPSL2Q6UWE3 100 aa8.1□□□□□ -1.11
CLIP1-208ENST00000537004 A0A087WZ39 114 aa8.09□□□□□ -1.11
CLIP1-208ENST00000537004 MT-ATP8P03928 68 aa8.09□□□□□ -1.11
CLIP1-208ENST00000537004 CIRBPQ14011 172 aaKnown RBP8.09□□□□□ -1.11
CLIP1-208ENST00000537004 SS18Q15532 418 aa8.09□□□□□ -1.11
CLIP1-208ENST00000537004 Q8N3U1 123 aa8.09□□□□□ -1.11
CLIP1-208ENST00000537004 RTL8CO15255 209 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 XGP55808 180 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 LELP1Q5T871 98 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 Q6ZR54 194 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 LINC00269Q8N2A0 174 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 COX7B2Q8TF08 81 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 PRO1854Q9UHT4 67 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 DNAH17Q9UFH2 4485 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.08□□□□□ -1.12
CLIP1-208ENST00000537004 EIF4EBP3O60516 100 aaPredicted RBP8.08□□□□□ -1.12
CLIP1-208ENST00000537004 XCL1P47992 114 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 CCL18P55774 89 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 ESRGQ1W209 222 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 C5orf38Q86SI9 138 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 TEN1Q86WV5 123 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 DAND5Q8N907 189 aa8.08□□□□□ -1.12
CLIP1-208ENST00000537004 A0A0B4J2C4 111 aa8.07□□□□□ -1.12
CLIP1-208ENST00000537004 H3BNG1 76 aa8.07□□□□□ -1.12
CLIP1-208ENST00000537004 ANGP03950 147 aaKnown RBP8.07□□□□□ -1.12
CLIP1-208ENST00000537004 NPC2P61916 151 aa8.07□□□□□ -1.12
CLIP1-208ENST00000537004 HERV-K104P63124 156 aa8.07□□□□□ -1.12
CLIP1-208ENST00000537004 TOMM7Q9P0U1 55 aa8.07□□□□□ -1.12
CLIP1-208ENST00000537004 TRBV20-1A0A075B6N2 111 aa8.07□□□□□ -1.12
CLIP1-208ENST00000537004 PKD1P98161 4303 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 IFITM1P13164 125 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 PSMB2P49721 201 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 REG3AQ06141 175 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 MEIG1Q5JSS6 88 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 LYPD5Q6UWN5 251 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 CARD19Q96LW7 228 aa8.06□□□□□ -1.12
CLIP1-208ENST00000537004 A0A0U1RRA0 63 aa8.05□□□□□ -1.12
CLIP1-208ENST00000537004 ANAPC13Q9BS18 74 aa8.05□□□□□ -1.12
CLIP1-208ENST00000537004 SFTA2Q6UW10 78 aa8.05□□□□□ -1.12
CLIP1-208ENST00000537004 LOC107984156A0A0G2JMH3 177 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 NBDYA0A0U1RRE5 68 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 M0QXV9 152 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 IGHV3-33P01772 117 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 ARL17AQ8IVW1 177 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 LINC00308Q8TCZ7 52 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 KRTAP1-5Q9BYS1 174 aa8.04□□□□□ -1.12
CLIP1-208ENST00000537004 CD164L2Q6UWJ8 174 aa8.03□□□□□ -1.12
CLIP1-208ENST00000537004 CHCHD10Q8WYQ3 142 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-208ENST00000537004 IGLV10-54A0A075B6I4 117 aa8.03□□□□□ -1.12
CLIP1-208ENST00000537004 KIAA1109Q2LD37 5005 aa8.02□□□□□ -1.12
CLIP1-208ENST00000537004 H7C2G1 150 aa8.02□□□□□ -1.13
CLIP1-208ENST00000537004 C1orf134Q5TEV5 83 aa8.02□□□□□ -1.13
CLIP1-208ENST00000537004 LINC01561Q8N1V8 128 aa8.02□□□□□ -1.13
CLIP1-208ENST00000537004 COPS9Q8WXC6 57 aa8.02□□□□□ -1.13
CLIP1-208ENST00000537004 LINC00336Q6ZUF6 198 aa8.02□□□□□ -1.13
CLIP1-208ENST00000537004 A0A1B0GVY2 172 aa8.01□□□□□ -1.13
CLIP1-208ENST00000537004 COX7A2LO14548 114 aa8.01□□□□□ -1.13
CLIP1-208ENST00000537004 TCL1BO95988 128 aa8.01□□□□□ -1.13
CLIP1-208ENST00000537004 C6orf226Q5I0X4 101 aa8.01□□□□□ -1.13
CLIP1-208ENST00000537004 SOSTDC1Q6X4U4 206 aa8.01□□□□□ -1.13
CLIP1-208ENST00000537004 PRR34Q9NV39 138 aa8.01□□□□□ -1.13
CLIP1-208ENST00000537004 KLK12Q9UKR0 248 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 339.8 ms