RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 PATJQ8NI35 1801 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 CFAP43Q8NDM7 1665 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 SMIM6P0DI80 62 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 MT4P47944 62 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 CATR1Q13166 79 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 Q5BKY6 102 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 CFAP126Q5VTH2 177 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 SSBP3-AS1Q7Z2R9 100 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 UBE2DNLQ8IWF7 75 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 TTC9CQ8N5M4 171 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 CYP4F30PQ9H0H9 118 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 SCN3BQ9NY72 215 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 R4GMQ9 66 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 LPAP08519 4548 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 MYH7P12883 1935 aa0.22□□□□□ -2.37
PRKDC-205ENST00000535375 DOCK1Q14185 1865 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 ZNF815PA8K554 130 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 M0R135 149 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 TNFP01375 233 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 C5orf38Q86SI9 138 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 AMELXQ99217 191 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 HUWE1Q7Z6Z7 4374 aaKnown RBP0.21□□□□□ -2.38
PRKDC-205ENST00000535375 PKHD1L1Q86WI1 4243 aa0.21□□□□□ -2.38
PRKDC-205ENST00000535375 C8orf59Q8N0T1 100 aaPredicted RBP0.2□□□□□ -2.38
PRKDC-205ENST00000535375 NALCNQ8IZF0 1738 aa0.2□□□□□ -2.38
PRKDC-205ENST00000535375 DIP2BQ9P265 1576 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 CUX1P39880 1505 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 OOSP1A8MZH6 123 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 SPAG11BQ08648 103 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 SPAG11AQ6PDA7 123 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 COMMD6Q7Z4G1 85 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 NDUFA4L2Q9NRX3 87 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 KIAA0556O60303 1618 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 ZNF609O15014 1411 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 KNL1Q8NG31 2342 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 DIP2AQ14689 1571 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 RB1CC1Q8TDY2 1594 aa0.19□□□□□ -2.38
PRKDC-205ENST00000535375 CEP170BQ9Y4F5 1589 aaPredicted RBP0.19□□□□□ -2.38
PRKDC-205ENST00000535375 AHCTF1Q8WYP5 2266 aa0.18□□□□□ -2.38
PRKDC-205ENST00000535375 MAP3K4Q9Y6R4 1608 aa0.18□□□□□ -2.38
PRKDC-205ENST00000535375 TRBV7-3A0A075B6L6 115 aa0.18□□□□□ -2.38
PRKDC-205ENST00000535375 SSSCA1O60232 199 aa0.18□□□□□ -2.38
PRKDC-205ENST00000535375 SPINK8P0C7L1 97 aa0.18□□□□□ -2.38
PRKDC-205ENST00000535375 C2orf88Q9BSF0 95 aa0.18□□□□□ -2.38
PRKDC-205ENST00000535375 PAPPA2Q9BXP8 1791 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 MUC17Q685J3 4493 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 SPINK1P00995 79 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 IFNGP01579 166 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 MGST2Q99735 147 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 CNFNQ9BYD5 112 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 LINC00474Q9P2X8 69 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 V9GYH0 126 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 DNAH6Q9C0G6 4158 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 KTN1Q86UP2 1357 aaKnown RBP0.17□□□□□ -2.38
PRKDC-205ENST00000535375 DNAH10Q8IVF4 4471 aa0.17□□□□□ -2.38
PRKDC-205ENST00000535375 SHROOM2Q13796 1616 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 RALGAPBQ86X10 1494 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 ASIPP42127 132 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 MRPL54Q6P161 138 aaKnown RBP0.16□□□□□ -2.38
PRKDC-205ENST00000535375 SMIM4Q8WVI0 70 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 TSLPQ969D9 159 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 LINC00472Q9H8W2 130 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 IER3IP1Q9Y5U9 82 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 FAM135AQ9P2D6 1515 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 COL14A1Q05707 1796 aaKnown RBP0.16□□□□□ -2.38
PRKDC-205ENST00000535375 TNXBP22105 4242 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 PREX2Q70Z35 1606 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 MYOM2P54296 1465 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 ABCA3Q99758 1704 aa0.16□□□□□ -2.38
PRKDC-205ENST00000535375 DNAH3Q8TD57 4116 aa0.15□□□□□ -2.38
PRKDC-205ENST00000535375 SMARCA2P51531 1590 aa0.15□□□□□ -2.38
PRKDC-205ENST00000535375 ROBO1Q9Y6N7 1651 aa0.15□□□□□ -2.39
PRKDC-205ENST00000535375 KIAA0586Q9BVV6 1533 aa0.15□□□□□ -2.39
PRKDC-205ENST00000535375 LINC00587B1AMM8 73 aa0.15□□□□□ -2.39
PRKDC-205ENST00000535375 NRXN3Q9Y4C0 1643 aa0.15□□□□□ -2.39
PRKDC-205ENST00000535375 NUP188Q5SRE5 1749 aa0.15□□□□□ -2.39
PRKDC-205ENST00000535375 ABCC10Q5T3U5 1492 aa0.15□□□□□ -2.39
PRKDC-205ENST00000535375 PREX1Q8TCU6 1659 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 SMG6Q86US8 1419 aaKnown RBP0.14□□□□□ -2.39
PRKDC-205ENST00000535375 DCAF1Q9Y4B6 1507 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 WNK2Q9Y3S1 2297 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 A0A0D9SFI3 127 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 CTXND1A0A1B0GTU2 59 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 CORTO00230 105 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 SPRR2EP22531 72 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 SPRR2BP35325 72 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 SPRR2AP35326 72 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 TPPP2P59282 170 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 C9orf153Q5TBE3 101 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 DYNLRB1Q9NP97 96 aa0.14□□□□□ -2.39
PRKDC-205ENST00000535375 LAMC1P11047 1609 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 PI4KAP42356 2102 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 SPRR2DP22532 72 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 FAM213BQ8TBF2 198 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 NRXN1Q9ULB1 1477 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 CUL7Q14999 1698 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 ZC3H13Q5T200 1668 aaKnown RBP0.13□□□□□ -2.39
PRKDC-205ENST00000535375 USP32Q8NFA0 1604 aa0.13□□□□□ -2.39
PRKDC-205ENST00000535375 VPS13BQ7Z7G8 4022 aa0.12□□□□□ -2.39
PRKDC-205ENST00000535375 HMGN4O00479 90 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms