RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SDHAF1A6NFY7 115 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 UBE2L6O14933 153 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 UQCRQO14949 82 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 HBDP02042 147 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 C3orf79P0CE67 100 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 FABP2P12104 132 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 POLR2KP53803 58 aaKnown RBP2.91□□□□□ -1.94
CD44-226ENST00000527889 LGALS9BQ3B8N2 356 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 SLC25A34Q6PIV7 304 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 SPATA12Q7Z6I5 190 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 PRR15Q8IV56 129 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 NXT2Q9NPJ8 142 aaKnown RBP2.91□□□□□ -1.94
CD44-226ENST00000527889 RBM12B-AS1Q9P1G2 102 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 CELA1Q9UNI1 258 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 PYGO1Q9Y3Y4 419 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 CSMD3Q7Z407 3707 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 LINC01546A6NGU7 62 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 H0Y9J4 135 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 K7EIL1 84 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 LEPROTL1O95214 131 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 PPP1R17O96001 155 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 DEFB130BP0DP73 79 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 DEFB130AP0DP74 79 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 FCER1GP30273 86 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 SEC11AP67812 179 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 ADAMTSL4-AS1Q5T5F5 129 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 Q8N976 141 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 Q8NAQ8 132 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 ATP6V0E2Q8NHE4 81 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 C18orf15Q96N68 181 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 C20orf78Q9BR46 151 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 HECTD4Q9Y4D8 3996 aa2.9□□□□□ -1.95
CD44-226ENST00000527889 TRAV13-1A0A0B4J241 112 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 TRGV4A0A0C4DH28 118 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 TRBV6-5A0A0K0K1A5 114 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 TRBV27A0A0K0K1C4 114 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 F8W1H4 67 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 TRACP01848 142 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 MIFP14174 115 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 LGALS3P17931 250 aaKnown RBP2.89□□□□□ -1.95
CD44-226ENST00000527889 HINT1P49773 126 aaPredicted RBP2.89□□□□□ -1.95
CD44-226ENST00000527889 RPL39P62891 51 aaKnown RBP2.89□□□□□ -1.95
CD44-226ENST00000527889 ORMDL2Q53FV1 153 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 DEFB121Q5J5C9 76 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 ZFP2Q6ZN57 461 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 KTN1-AS1Q86SY8 53 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 ATOH7Q8N100 152 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 C3orf22Q8N5N4 141 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 LINC00612Q8N6U2 182 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 SLC25A29Q8N8R3 303 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 IFI27L1Q96BM0 104 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 LYSTQ99698 3801 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 PMCHL2Q9BQD1 86 aa2.89□□□□□ -1.95
CD44-226ENST00000527889 C11orf68Q9H3H3 251 aaKnown RBP2.89□□□□□ -1.95
CD44-226ENST00000527889 PLECQ15149 4684 aaKnown RBP2.89□□□□□ -1.95
CD44-226ENST00000527889 TRBV20-1A0A075B6N2 111 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 IGHV3OR16-9A0A0B4J2B5 98 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 TRBV7-6A0A0J9YX20 115 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 SYS1-DBNDD2H3BUS1 97 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 I3L3M4 83 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 TAX1BP3O14907 124 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 HTN3P15516 51 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 CXCL5P42830 114 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 MP68P56378 58 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 RHOHQ15669 191 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 KPRPQ5T749 579 aaPredicted RBP2.88□□□□□ -1.95
CD44-226ENST00000527889 ZC2HC1BQ5TFG8 222 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 C2orf66Q6UXQ4 117 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 SBSPONQ8IVN8 264 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 TOMM6Q96B49 74 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 CARD19Q96LW7 228 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 SCGB3A1Q96QR1 104 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 HIST1H4GQ99525 98 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 SPCS1Q9Y6A9 102 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 STARD9Q9P2P6 4700 aa2.88□□□□□ -1.95
CD44-226ENST00000527889 TRBV7-3A0A075B6L6 115 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.87□□□□□ -1.95
CD44-226ENST00000527889 A0A087X002 238 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 SMIM26A0A096LP01 95 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 A0A096LPF7 62 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 A0A0J9YWU9 116 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 A0A0J9YY99 117 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 TRBV10-1A0A0K0K1A3 114 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 TRBV6-4A0A1B0GX49 114 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 IGKV2-29A2NJV5 120 aaPredicted RBP2.87□□□□□ -1.95
CD44-226ENST00000527889 NDUFC2-KCTD14E9PQ53 114 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 MT-ATP8P03928 68 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 SPART-AS1P0CW21 52 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 SCGB1C2P0DMR2 95 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 NMUP48645 174 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 UBE2D3P61077 147 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 UBE2D2P62837 147 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 RPL36AP83881 106 aaKnown RBP2.87□□□□□ -1.95
CD44-226ENST00000527889 SPATA45Q537H7 98 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 LINC01545Q5VT33 79 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 LINC00526Q96FQ7 95 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 DPH3Q96FX2 82 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 OPRPNQ99935 248 aaPredicted RBP2.87□□□□□ -1.95
CD44-226ENST00000527889 CHCHD7Q9BUK0 85 aa2.87□□□□□ -1.95
CD44-226ENST00000527889 IGHV1-58A0A0C4DH39 117 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms