RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 CCL18P55774 89 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 SDIM1Q6ZPB5 146 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 LINC00337Q8N6G1 96 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 A0A087WYN8 130 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 RETNQ9HD89 108 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 LAMTOR3Q9UHA4 124 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 TRBV10-1A0A0K0K1A3 114 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 LY6G6DO95868 133 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 SMIM11BQ8TCY0 68 aa9.48□□□□□ -0.89
GPC1-209ENST00000495100 TIRAPP58753 221 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 WFDC9Q8NEX5 89 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 COX7A2LO14548 114 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 C6orf223Q8N319 242 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 RNF152Q8N8N0 203 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 COPS9Q8WXC6 57 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 FHL2Q14192 279 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 BEAN1Q3B7T3 259 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 OXLD1Q5BKU9 147 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 TRRAPQ9Y4A5 3859 aa9.47□□□□□ -0.89
GPC1-209ENST00000495100 GIG44P09565 113 aaPredicted RBP9.46□□□□□ -0.89
GPC1-209ENST00000495100 NDUFV3P56181 108 aaKnown RBP9.46□□□□□ -0.89
GPC1-209ENST00000495100 SPANXDQ9BXN6 97 aa9.46□□□□□ -0.9
GPC1-209ENST00000495100 SPANXCQ9NY87 97 aa9.46□□□□□ -0.9
GPC1-209ENST00000495100 AKAP9Q99996 3911 aa9.45□□□□□ -0.9
GPC1-209ENST00000495100 LINC00959A0A1B0GUT2 108 aa9.45□□□□□ -0.9
GPC1-209ENST00000495100 IGLV1-51P01701 117 aa9.45□□□□□ -0.9
GPC1-209ENST00000495100 SMIM20Q8N5G0 67 aa9.45□□□□□ -0.9
GPC1-209ENST00000495100 TRAV13-2A0A0B4J235 113 aa9.44□□□□□ -0.9
GPC1-209ENST00000495100 TRAV25A0A0B4J276 109 aa9.44□□□□□ -0.9
GPC1-209ENST00000495100 FSHBP01225 129 aa9.44□□□□□ -0.9
GPC1-209ENST00000495100 RPL18AQ02543 176 aaKnown RBP9.44□□□□□ -0.9
GPC1-209ENST00000495100 CHCHD10Q8WYQ3 142 aaPredicted RBP9.43□□□□□ -0.9
GPC1-209ENST00000495100 PRO0255Q9UI72 69 aa9.43□□□□□ -0.9
GPC1-209ENST00000495100 A0A087WVE0 104 aa9.43□□□□□ -0.9
GPC1-209ENST00000495100 KRTAP1-3Q8IUG1 177 aa9.43□□□□□ -0.9
GPC1-209ENST00000495100 H3BT86 120 aa9.42□□□□□ -0.9
GPC1-209ENST00000495100 IGHV4-28A0A0C4DH34 117 aa9.42□□□□□ -0.9
GPC1-209ENST00000495100 REG3AQ06141 175 aa9.42□□□□□ -0.9
GPC1-209ENST00000495100 DEFB121Q5J5C9 76 aa9.42□□□□□ -0.9
GPC1-209ENST00000495100 TRBV6-4A0A1B0GX49 114 aa9.42□□□□□ -0.9
GPC1-209ENST00000495100 HERV-K104P63124 156 aa9.41□□□□□ -0.9
GPC1-209ENST00000495100 CELA1Q9UNI1 258 aa9.41□□□□□ -0.9
GPC1-209ENST00000495100 UNQ6190/PRO20217Q6UXQ8 127 aa9.41□□□□□ -0.9
GPC1-209ENST00000495100 TENM3Q9P273 2699 aa9.41□□□□□ -0.9
GPC1-209ENST00000495100 KMT2BQ9UMN6 2715 aaPredicted RBP9.4□□□□□ -0.9
GPC1-209ENST00000495100 HAMPP81172 84 aa9.4□□□□□ -0.9
GPC1-209ENST00000495100 C9orf129Q5T035 196 aaKnown RBP9.4□□□□□ -0.9
GPC1-209ENST00000495100 MRPL23Q16540 153 aaKnown RBP9.4□□□□□ -0.91
GPC1-209ENST00000495100 C6orf99Q4VX62 202 aa9.39□□□□□ -0.91
GPC1-209ENST00000495100 DEFB105AQ8NG35 78 aa9.39□□□□□ -0.91
GPC1-209ENST00000495100 SPAG11BQ08648 103 aa9.39□□□□□ -0.91
GPC1-209ENST00000495100 LRRC75A-AS1Q8N1F1 130 aa9.39□□□□□ -0.91
GPC1-209ENST00000495100 C9orf153Q5TBE3 101 aa9.39□□□□□ -0.91
GPC1-209ENST00000495100 HILS1P60008 231 aa9.38□□□□□ -0.91
GPC1-209ENST00000495100 KRTAP10-3P60369 221 aa9.38□□□□□ -0.91
GPC1-209ENST00000495100 SCXQ7RTU7 201 aa9.38□□□□□ -0.91
GPC1-209ENST00000495100 IGLV5-39A0A0G2JS06 123 aa9.38□□□□□ -0.91
GPC1-209ENST00000495100 CMC4P56277 68 aaPredicted RBP9.38□□□□□ -0.91
GPC1-209ENST00000495100 IGKV2D-24A0A075B6R9 120 aa9.37□□□□□ -0.91
GPC1-209ENST00000495100 IGHV3OR16-9A0A0B4J2B5 98 aa9.37□□□□□ -0.91
GPC1-209ENST00000495100 PLAC8L1A1L4L8 177 aa9.37□□□□□ -0.91
GPC1-209ENST00000495100 ZNF561-AS1K7EIQ3 104 aa9.36□□□□□ -0.91
GPC1-209ENST00000495100 KLK5Q9Y337 293 aaPredicted RBP9.36□□□□□ -0.91
GPC1-209ENST00000495100 IGKV2-28A0A075B6P5 120 aa9.36□□□□□ -0.91
GPC1-209ENST00000495100 IGKV2D-28P01615 120 aa9.36□□□□□ -0.91
GPC1-209ENST00000495100 CXCL5P42830 114 aa9.36□□□□□ -0.91
GPC1-209ENST00000495100 C10orf25Q5T742 122 aa9.35□□□□□ -0.91
GPC1-209ENST00000495100 ORMDL1Q9P0S3 153 aa9.34□□□□□ -0.91
GPC1-209ENST00000495100 INAFM2P0DMQ5 153 aa9.33□□□□□ -0.92
GPC1-209ENST00000495100 STAB2Q8WWQ8 2551 aa9.33□□□□□ -0.92
GPC1-209ENST00000495100 TRAV23DV6A0A075B6W5 121 aa9.33□□□□□ -0.92
GPC1-209ENST00000495100 SPART-AS1P0CW21 52 aa9.33□□□□□ -0.92
GPC1-209ENST00000495100 C19orf73Q9NVV2 129 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 APOC4P55056 127 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 A0A087WZ39 114 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 TIMM17BO60830 172 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 IGHV4-30-4P0DP06 118 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 SBSPONQ8IVN8 264 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 SMCR5Q8TEV8 140 aa9.32□□□□□ -0.92
GPC1-209ENST00000495100 A0A1B0GX51 115 aa9.31□□□□□ -0.92
GPC1-209ENST00000495100 C9orf66Q5T8R8 295 aa9.31□□□□□ -0.92
GPC1-209ENST00000495100 CAMK2N2Q96S95 79 aa9.31□□□□□ -0.92
GPC1-209ENST00000495100 IGLV5-45A0A087WSX0 123 aa9.31□□□□□ -0.92
GPC1-209ENST00000495100 CYSRT1A8MQ03 144 aa9.31□□□□□ -0.92
GPC1-209ENST00000495100 CSNK1G2-AS1Q8NCQ2 148 aa9.31□□□□□ -0.92
GPC1-209ENST00000495100 IBA57-AS1B1ANH7 110 aa9.3□□□□□ -0.92
GPC1-209ENST00000495100 X6R8D5 127 aa9.3□□□□□ -0.92
GPC1-209ENST00000495100 KRTAP1-1Q07627 177 aa9.3□□□□□ -0.92
GPC1-209ENST00000495100 TENM2Q9NT68 2774 aa9.29□□□□□ -0.92
GPC1-209ENST00000495100 LINC00846Q9NV44 126 aa9.28□□□□□ -0.92
GPC1-209ENST00000495100 NHLRC4P0CG21 123 aaPredicted RBP9.28□□□□□ -0.92
GPC1-209ENST00000495100 WFDC10BQ8IUB3 73 aa9.28□□□□□ -0.92
GPC1-209ENST00000495100 CSDC2Q9Y534 153 aaKnown RBP9.28□□□□□ -0.92
GPC1-209ENST00000495100 Q6ZQY7 126 aa9.27□□□□□ -0.92
GPC1-209ENST00000495100 CITED1Q99966 193 aa9.27□□□□□ -0.92
GPC1-209ENST00000495100 hADV29S1A0JD25 119 aa9.27□□□□□ -0.93
GPC1-209ENST00000495100 TRACP01848 142 aa9.27□□□□□ -0.93
GPC1-209ENST00000495100 NANOS2P60321 138 aaKnown RBP9.27□□□□□ -0.93
GPC1-209ENST00000495100 SHISA2Q6UWI4 295 aa9.27□□□□□ -0.93
GPC1-209ENST00000495100 ENHOQ6UWT2 76 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms