RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 KIAA1551Q9HCM1 1747 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 SBF2Q86WG5 1849 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 URB1O60287 2271 aaKnown RBP0.26□□□□□ -2.37
CPSF3-205ENST00000489629 NRAPQ86VF7 1730 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 MYO5CQ9NQX4 1742 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 ALS2Q96Q42 1657 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 PLXNC1O60486 1568 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 SPAARA0A1B0GVQ0 90 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 J3QR89 54 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 NDUFA2O43678 99 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 NCR2O95944 276 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 SMR3BP02814 79 aaPredicted RBP0.25□□□□□ -2.37
CPSF3-205ENST00000489629 SPRR2EP22531 72 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 SPRR2DP22532 72 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 SPRR2BP35325 72 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 SPRR2AP35326 72 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 RRAS2P62070 204 aaPredicted RBP0.25□□□□□ -2.37
CPSF3-205ENST00000489629 DEFB124Q8NES8 71 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 VSTM2AQ8TAG5 236 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 C10orf82Q8WW14 230 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 TMEM141Q96I45 108 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 TPT1P8Q9HAU6 139 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 ERG28Q9UKR5 140 aa0.25□□□□□ -2.37
CPSF3-205ENST00000489629 QSER1Q2KHR3 1735 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 ARAP2Q8WZ64 1704 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 TOGARAM1Q9Y4F4 1720 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 AGLP35573 1532 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 ATP7AQ04656 1500 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 NLRP1Q9C000 1473 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 MBD5Q9P267 1494 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 PLCE1Q9P212 2302 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 VPS13BQ7Z7G8 4022 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 TRAV12-3A0A0B4J271 114 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 TEX49A0A1B0GTD5 131 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 CLPSL1A2RUU4 121 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 YPEL1O60688 119 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 CCL3L1P16619 93 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 COPZ1P61923 177 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 UBE2G1P62253 170 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 C20orf197Q8N268 126 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 DPH3Q96FX2 82 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 Q96NJ1 140 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 SAR1AQ9NR31 198 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 UBR3Q6ZT12 1888 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 C4AP0C0L4 1744 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 NALCNQ8IZF0 1738 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 LMO7Q8WWI1 1683 aa0.24□□□□□ -2.37
CPSF3-205ENST00000489629 ABCC8Q09428 1581 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 CCDC18Q5T9S5 1454 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 TCRBV3S1A0A5B6 114 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 ARPC4P59998 168 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 SPCS2Q15005 226 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 C9orf116Q5BN46 136 aaPredicted RBP0.23□□□□□ -2.37
CPSF3-205ENST00000489629 NDUFA11Q86Y39 141 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 BET1LQ9NYM9 111 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 MROH2AA6NES4 1674 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 MROH1Q8NDA8 1641 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 MYH8P13535 1937 aa0.23□□□□□ -2.37
CPSF3-205ENST00000489629 ATP7BP35670 1465 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 DOCK1Q14185 1865 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 MYO7AQ13402 2215 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 AKAP12Q02952 1782 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 KDM3BQ7LBC6 1761 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 KIF1AQ12756 1690 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 FAM208AQ9UK61 1670 aaKnown RBP0.22□□□□□ -2.37
CPSF3-205ENST00000489629 CCDC179H3BU77 68 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 APOC1P02654 83 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 FXYD6P3P58550 94 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 S100A7L2Q5SY68 101 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 SLC48A1Q6P1K1 146 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 CYP2G1PQ6ZSU1 146 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 COX7B2Q8TF08 81 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 DSCR8Q96T75 97 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 VPS25Q9BRG1 176 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 PSMG3Q9BT73 122 aaPredicted RBP0.22□□□□□ -2.37
CPSF3-205ENST00000489629 FAM107BQ9H098 131 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 TMEM242Q9NWH2 141 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 PLAC8Q9NZF1 115 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 BTAF1O14981 1849 aa0.22□□□□□ -2.37
CPSF3-205ENST00000489629 NCOA3Q9Y6Q9 1424 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 CDC42BPAQ5VT25 1732 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 IBTKQ9P2D0 1353 aaPredicted RBP0.21□□□□□ -2.38
CPSF3-205ENST00000489629 SCN7AQ01118 1682 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 TRAV12-2A0A075B6T6 113 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 GVQW2A0A096LPI5 108 aaPredicted RBP0.21□□□□□ -2.38
CPSF3-205ENST00000489629 GNG7O60262 68 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 IL5P05113 134 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 HIST1H1DP16402 221 aaKnown RBP0.21□□□□□ -2.38
CPSF3-205ENST00000489629 S100A12P80511 92 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 CCDC58Q4VC31 144 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 SPANXN1Q5VSR9 72 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 C4orf33Q8N1A6 199 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 TCEAL4Q96EI5 215 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 PFDN5Q99471 154 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 COA4Q9NYJ1 87 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 FLGP20930 4061 aaPredicted RBP0.21□□□□□ -2.38
CPSF3-205ENST00000489629 PATJQ8NI35 1801 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 SIPA1L3O60292 1781 aaPredicted RBP0.21□□□□□ -2.38
CPSF3-205ENST00000489629 POLA1P09884 1462 aaPredicted RBP0.21□□□□□ -2.38
CPSF3-205ENST00000489629 NCOA2Q15596 1464 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms