RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 STAB2Q8WWQ8 2551 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 RPL13AP40429 203 aaKnown RBP8.42□□□□□ -1.06
HDAC6-230ENST00000488543 F5H768 121 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 UBE2L6O14933 153 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 GAGE6Q13070 117 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 ATXN8Q156A1 80 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 C5orf47Q569G3 176 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 TRAV26-1A0A087WT03 109 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 NANOS2P60321 138 aaKnown RBP8.41□□□□□ -1.06
HDAC6-230ENST00000488543 ZFAND6Q6FIF0 208 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 Q6ZTC4 211 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 FAM19A3Q7Z5A8 133 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 Q9H8V8 135 aa8.41□□□□□ -1.06
HDAC6-230ENST00000488543 A0A096LPF7 62 aa8.4□□□□□ -1.06
HDAC6-230ENST00000488543 LINC00242Q5T6M2 205 aa8.4□□□□□ -1.06
HDAC6-230ENST00000488543 SPANXDQ9BXN6 97 aa8.4□□□□□ -1.06
HDAC6-230ENST00000488543 SPANXCQ9NY87 97 aa8.4□□□□□ -1.06
HDAC6-230ENST00000488543 IGLV5-45A0A087WSX0 123 aa8.4□□□□□ -1.07
HDAC6-230ENST00000488543 C11orf68Q9H3H3 251 aaKnown RBP8.4□□□□□ -1.07
HDAC6-230ENST00000488543 IGKV3OR2-268A0A0C4DH90 116 aa8.39□□□□□ -1.07
HDAC6-230ENST00000488543 CHCHD5Q9BSY4 110 aa8.39□□□□□ -1.07
HDAC6-230ENST00000488543 IGLV4-60A0A075B6I1 120 aa8.39□□□□□ -1.07
HDAC6-230ENST00000488543 TRBV30A0A0K0K1B3 111 aa8.39□□□□□ -1.07
HDAC6-230ENST00000488543 A0A1B0GV72 72 aa8.39□□□□□ -1.07
HDAC6-230ENST00000488543 SOSTDC1Q6X4U4 206 aa8.38□□□□□ -1.07
HDAC6-230ENST00000488543 C2orf82Q6UX34 121 aa8.38□□□□□ -1.07
HDAC6-230ENST00000488543 C11orf45Q8TAV5 145 aa8.38□□□□□ -1.07
HDAC6-230ENST00000488543 B9D2Q9BPU9 175 aa8.37□□□□□ -1.07
HDAC6-230ENST00000488543 NDUFA1O15239 70 aa8.37□□□□□ -1.07
HDAC6-230ENST00000488543 TRBV10-2A0A0K0K1G8 114 aa8.36□□□□□ -1.07
HDAC6-230ENST00000488543 SMIM1B2RUZ4 78 aa8.36□□□□□ -1.07
HDAC6-230ENST00000488543 HERVK_113P63121 156 aa8.36□□□□□ -1.07
HDAC6-230ENST00000488543 LINC00308Q8TCZ7 52 aa8.36□□□□□ -1.07
HDAC6-230ENST00000488543 UBE2WQ96B02 151 aa8.35□□□□□ -1.07
HDAC6-230ENST00000488543 GHRHP01286 108 aa8.34□□□□□ -1.07
HDAC6-230ENST00000488543 MEIG1Q5JSS6 88 aa8.34□□□□□ -1.07
HDAC6-230ENST00000488543 IGLV5-39A0A0G2JS06 123 aa8.34□□□□□ -1.08
HDAC6-230ENST00000488543 A0A1B0GUV1 79 aa8.34□□□□□ -1.08
HDAC6-230ENST00000488543 TTC32Q5I0X7 151 aa8.34□□□□□ -1.08
HDAC6-230ENST00000488543 FBN3Q75N90 2809 aa8.33□□□□□ -1.08
HDAC6-230ENST00000488543 TRAV8-4A0A0B4J246 113 aa8.33□□□□□ -1.08
HDAC6-230ENST00000488543 DEFB131BA0A096LNP1 70 aa8.32□□□□□ -1.08
HDAC6-230ENST00000488543 LST1O00453 97 aa8.32□□□□□ -1.08
HDAC6-230ENST00000488543 TMEM262E9PQX1 116 aa8.32□□□□□ -1.08
HDAC6-230ENST00000488543 COX6CP09669 75 aa8.32□□□□□ -1.08
HDAC6-230ENST00000488543 TOMM7Q9P0U1 55 aa8.32□□□□□ -1.08
HDAC6-230ENST00000488543 Q8N3U1 123 aa8.31□□□□□ -1.08
HDAC6-230ENST00000488543 H3BNG1 76 aa8.31□□□□□ -1.08
HDAC6-230ENST00000488543 LELP1Q5T871 98 aa8.31□□□□□ -1.08
HDAC6-230ENST00000488543 TGP01266 2768 aa8.31□□□□□ -1.08
HDAC6-230ENST00000488543 LINC00959A0A1B0GUT2 108 aa8.3□□□□□ -1.08
HDAC6-230ENST00000488543 CIRBPQ14011 172 aaKnown RBP8.3□□□□□ -1.08
HDAC6-230ENST00000488543 C15orf53Q8NAA6 179 aa8.3□□□□□ -1.08
HDAC6-230ENST00000488543 ANAPC13Q9BS18 74 aa8.3□□□□□ -1.08
HDAC6-230ENST00000488543 CSMD3Q7Z407 3707 aa8.3□□□□□ -1.08
HDAC6-230ENST00000488543 TIMM17BO60830 172 aa8.3□□□□□ -1.08
HDAC6-230ENST00000488543 SNCGO76070 127 aa8.29□□□□□ -1.08
HDAC6-230ENST00000488543 LYPD5Q6UWN5 251 aa8.29□□□□□ -1.08
HDAC6-230ENST00000488543 IGHV3OR16-9A0A0B4J2B5 98 aa8.29□□□□□ -1.08
HDAC6-230ENST00000488543 IFITM1P13164 125 aa8.29□□□□□ -1.08
HDAC6-230ENST00000488543 FAM218AQ96MZ4 157 aa8.29□□□□□ -1.08
HDAC6-230ENST00000488543 TENM2Q9NT68 2774 aa8.28□□□□□ -1.08
HDAC6-230ENST00000488543 NHLRC4P0CG21 123 aaPredicted RBP8.28□□□□□ -1.08
HDAC6-230ENST00000488543 CLPSL2Q6UWE3 100 aa8.27□□□□□ -1.09
HDAC6-230ENST00000488543 LYSTQ99698 3801 aa8.27□□□□□ -1.09
HDAC6-230ENST00000488543 GAGE2BQ13066 116 aa8.27□□□□□ -1.09
HDAC6-230ENST00000488543 GAGE2EQ4V326 116 aa8.27□□□□□ -1.09
HDAC6-230ENST00000488543 GAGE2DQ9UEU5 116 aa8.27□□□□□ -1.09
HDAC6-230ENST00000488543 H3BT86 120 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 LINC00269Q8N2A0 174 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 Q9HAA7 133 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 A0A087WZ39 114 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 TRAV10A0A0B4J240 114 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 SERTAD4-AS1Q5TG53 156 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 C5orf38Q86SI9 138 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 MIR7-3HGQ8N6C7 128 aa8.26□□□□□ -1.09
HDAC6-230ENST00000488543 SS18Q15532 418 aa8.25□□□□□ -1.09
HDAC6-230ENST00000488543 COX7A2LO14548 114 aa8.25□□□□□ -1.09
HDAC6-230ENST00000488543 ANGP03950 147 aaKnown RBP8.25□□□□□ -1.09
HDAC6-230ENST00000488543 C6orf226Q5I0X4 101 aa8.25□□□□□ -1.09
HDAC6-230ENST00000488543 PFN2P35080 140 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 LINC00337Q8N6G1 96 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 XCL1P47992 114 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 NDUFV3P56181 108 aaKnown RBP8.24□□□□□ -1.09
HDAC6-230ENST00000488543 REG3AQ06141 175 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 ESRGQ1W209 222 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 COX7B2Q8TF08 81 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 LINC01600Q96MT4 127 aa8.24□□□□□ -1.09
HDAC6-230ENST00000488543 IGKV2-28A0A075B6P5 120 aa8.23□□□□□ -1.09
HDAC6-230ENST00000488543 CCDC179H3BU77 68 aa8.23□□□□□ -1.09
HDAC6-230ENST00000488543 IGKV2D-28P01615 120 aa8.23□□□□□ -1.09
HDAC6-230ENST00000488543 LINC00158P58513 81 aa8.23□□□□□ -1.09
HDAC6-230ENST00000488543 SS18L2Q9UHA2 77 aa8.23□□□□□ -1.09
HDAC6-230ENST00000488543 C22orf24Q9Y442 160 aa8.23□□□□□ -1.09
HDAC6-230ENST00000488543 B5MCH6 92 aa8.22□□□□□ -1.09
HDAC6-230ENST00000488543 WFDC10BQ8IUB3 73 aa8.22□□□□□ -1.09
HDAC6-230ENST00000488543 J3QL48 77 aa8.22□□□□□ -1.09
HDAC6-230ENST00000488543 SMCR5Q8TEV8 140 aa8.22□□□□□ -1.09
HDAC6-230ENST00000488543 CHCHD10Q8WYQ3 142 aaPredicted RBP8.22□□□□□ -1.09
HDAC6-230ENST00000488543 PRR34Q9NV39 138 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms