RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 NDUFB1O75438 58 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 ACACBO00763 2458 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 IGKV2-28A0A075B6P5 120 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 ERC2-IT1O76042 136 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 IGKV2D-28P01615 120 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 FUSP35637 526 aaKnown RBP eCLIP3.78□□□□□ -1.8
SYNE1-220ENST00000471834 SERP2Q8N6R1 65 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-220ENST00000471834 NREPQ16612 68 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 PRM2P04554 102 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 DIRC1Q969H9 104 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 SMR3AQ99954 134 aa3.78□□□□□ -1.8
SYNE1-220ENST00000471834 CDKN2A-AS1Q9UH64 79 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 SONP18583 2426 aaKnown RBP3.77□□□□□ -1.81
SYNE1-220ENST00000471834 SMIM9A6NGZ8 99 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 EPG5Q9HCE0 2579 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 VPREB1P12018 145 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 REG3GQ6UW15 175 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 UBR5O95071 2799 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-220ENST00000471834 LOC107984640A0A0U1RRK4 108 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 WFDC10BQ8IUB3 73 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 C2CD3Q4AC94 2353 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 IGKV4-1P06312 121 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 EDN2P20800 178 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 PKD1L2Q7Z442 2459 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 TMEM256-PLSCR3K7ERE1 68 aa3.77□□□□□ -1.81
SYNE1-220ENST00000471834 NAV2Q8IVL1 2488 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 SPAG11BQ08648 103 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 C10orf99Q6UWK7 81 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 FAM19A5Q7Z5A7 132 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-220ENST00000471834 FAM218AQ96MZ4 157 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 SZT2Q5T011 3432 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 LOC110117498A0A087WWA1 95 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 PLAC8L1A1L4L8 177 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 IBA57-AS1B1ANH7 110 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 SEC61GP60059 68 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 C16orf95Q9H693 158 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 COX7BP24311 80 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 FAM30AQ9NZY2 134 aa3.76□□□□□ -1.81
SYNE1-220ENST00000471834 ITPR3Q14573 2671 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 ZGRF1Q86YA3 2104 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 CDC42SE2Q9NRR3 84 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 ZNF706Q9Y5V0 76 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-220ENST00000471834 A8MZ25 164 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 CYSTM1Q9H1C7 97 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 NCOR2Q9Y618 2525 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 TRBV7-6A0A0J9YX20 115 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 ENHOQ6UWT2 76 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 Q6ZTI0 123 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 EYSQ5T1H1 3165 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 REG3AQ06141 175 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 KIAA0087Q14695 138 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 NTM-AS1Q6ZSK4 140 aa3.75□□□□□ -1.81
SYNE1-220ENST00000471834 POLQO75417 2590 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 SETXQ7Z333 2677 aaKnown RBP3.74□□□□□ -1.81
SYNE1-220ENST00000471834 A0A096LNI7 61 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 A0A1B0GW54 56 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 RETNQ9HD89 108 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 Q6YL49 198 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 MIFP14174 115 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 LINC00474Q9P2X8 69 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 C1orf158Q8N1D5 194 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 RPL37AP8A6NKH3 93 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 FAM19A1Q7Z5A9 133 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 CSNK1G2-AS1Q8NCQ2 148 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 WFDC10AQ9H1F0 79 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 MXRA5Q9NR99 2828 aa3.74□□□□□ -1.81
SYNE1-220ENST00000471834 HIVEP3Q5T1R4 2406 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 MP68P56378 58 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 SNURFQ9Y675 71 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 H3BQ85 93 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 USP17L23D6RBM5 183 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 IGHV4-30-4P0DP06 118 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 CDSNQ15517 529 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 CHCHD10Q8WYQ3 142 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-220ENST00000471834 TRBV6-4A0A1B0GX49 114 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 C6orf223Q8N319 242 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 SPTSSBQ8NFR3 76 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 TRBV7-4A0A0J9YYF1 115 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 C19orf73Q9NVV2 129 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 MYO18BQ8IUG5 2567 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 A0A1B0GUV1 79 aa3.73□□□□□ -1.81
SYNE1-220ENST00000471834 ADGRG4Q8IZF6 3080 aa3.72□□□□□ -1.81
SYNE1-220ENST00000471834 RETNLBQ9BQ08 111 aa3.72□□□□□ -1.81
SYNE1-220ENST00000471834 H7BZZ5 65 aa3.72□□□□□ -1.81
SYNE1-220ENST00000471834 GIG44P09565 113 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-220ENST00000471834 LINC00846Q9NV44 126 aa3.72□□□□□ -1.81
SYNE1-220ENST00000471834 IGLV9-49A0A0B4J1Y8 123 aa3.72□□□□□ -1.81
SYNE1-220ENST00000471834 Q9UF83 564 aa3.71□□□□□ -1.81
SYNE1-220ENST00000471834 JMJD7-PLA2G4BH0Y9G9 81 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 UNC79Q9P2D8 2635 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 PRR4Q16378 134 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 GVQW2A0A096LPI5 108 aaPredicted RBP3.71□□□□□ -1.82
SYNE1-220ENST00000471834 LYRM9A8MSI8 78 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 ZNF462Q96JM2 2506 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 XIRP2A4UGR9 3374 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 MGAQ8IWI9 3026 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 ZZEF1O43149 2961 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 CASC2Q6XLA1 102 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 CDH23Q9H251 3354 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms