RNA–Protein interactions for RNA: ENST00000443638.1

TM9SF3-202, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 3

Gene TM9SF3, Length 868 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-202ENST00000443638 CACNA1HO95180 2353 aa2.12□□□□□ -2.07
TM9SF3-202ENST00000443638 GVINP1Q7Z2Y8 2422 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 TEP1Q99973 2627 aaKnown RBP2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 VPS13AQ96RL7 3174 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 TET1Q8NFU7 2136 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 EXPH5Q8NEV8 1989 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 COX6CP09669 75 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 RPL37AP61513 92 aaKnown RBP2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 SSBP1Q04837 148 aaKnown RBP2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 ADIRFQ15847 76 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 ZNF56Q15929 161 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 Q8N6K4 173 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 SPCS1Q9Y6A9 102 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 DOCK2Q92608 1830 aa2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 EP300Q09472 2414 aaPredicted RBP2.11□□□□□ -2.07
TM9SF3-202ENST00000443638 TNRC6BQ9UPQ9 1833 aaKnown RBP2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 TRAV22A0A0B4J277 110 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 A0A0G2JND7 137 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 NBDYA0A0U1RRE5 68 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 CHKB-CPT1BH3BT56 60 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 EDDM3BP56851 147 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 FXYD4P59646 89 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 ELOF1P60002 83 aaKnown RBP2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 C20orf197Q8N268 126 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 ST20Q9HBF5 79 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 SPEGQ15772 3267 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 HIVEP2P31629 2446 aa2.1□□□□□ -2.07
TM9SF3-202ENST00000443638 DNAH14Q0VDD8 3507 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 WDR87Q6ZQQ6 2873 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 SPAG17Q6Q759 2223 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 FRYQ5TBA9 3013 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 CLPSL1A2RUU4 121 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 H7BZZ5 65 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 PRB1P04280 392 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 Q5VV11 94 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 VMO1Q7Z5L0 202 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 DYNLRB1Q9NP97 96 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 LENEPQ9Y5L5 61 aa2.09□□□□□ -2.07
TM9SF3-202ENST00000443638 KIF20BQ96Q89 1820 aa2.09□□□□□ -2.08
TM9SF3-202ENST00000443638 CEP250Q9BV73 2442 aa2.09□□□□□ -2.08
TM9SF3-202ENST00000443638 ZNF462Q96JM2 2506 aa2.09□□□□□ -2.08
TM9SF3-202ENST00000443638 MYO15AQ9UKN7 3530 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 ZZEF1O43149 2961 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 PLXNB2O15031 1838 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 LOC101927531A0A1B0GV80 90 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 CCL3L1P16619 93 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 ETDBQ3ZM63 59 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 SMCO4Q9NRQ5 59 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 NDUFA4L2Q9NRX3 87 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 BPTFQ12830 3046 aa2.08□□□□□ -2.08
TM9SF3-202ENST00000443638 PSME4Q14997 1843 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 PTPN13Q12923 2485 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 A0A1W2PPM0 123 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 SMIM11AP58511 58 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 LCE1BQ5T7P3 118 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 FAM74A4Q5TZK3 123 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 COX7B2Q8TF08 81 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 PPP1R1CQ8WVI7 109 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 NBEAQ8NFP9 2946 aa2.07□□□□□ -2.08
TM9SF3-202ENST00000443638 MED13Q9UHV7 2174 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 ASPMQ8IZT6 3477 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 LOC285095A0A1B0GVY8 99 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 TMEM14DPA8MWL7 114 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 BCE1O60756 84 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 PPP1R17O96001 155 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 KLKP1Q107X0 134 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 CDC42SE2Q9NRR3 84 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 HIGD1BQ9P298 99 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 HELZ2Q9BYK8 2649 aaKnown RBP2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 DOPEY1Q5JWR5 2465 aa2.06□□□□□ -2.08
TM9SF3-202ENST00000443638 FRYLO94915 3013 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 IGKV2-40A0A087WW87 121 aaPredicted RBP2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 KANTRA0A1W2PQU2 76 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 IGKV2-29A2NJV5 120 aaPredicted RBP2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 HMGN4O00479 90 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 IGKV2D-40P01614 121 aaPredicted RBP2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 DEFA5Q01523 94 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 SPAG11BQ08648 103 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 FXYD3Q14802 87 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 PMCHL1Q16048 86 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 NMSQ5H8A3 153 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 XAF1Q6GPH4 301 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 SPAG11AQ6PDA7 123 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 SFTA2Q6UW10 78 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 BPESC1Q9GZL8 116 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 V9GYH0 126 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 ABCA12Q86UK0 2595 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 ANKRD17O75179 2603 aaKnown RBP2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 HECTD1Q9ULT8 2610 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 LRRC37AA6NMS7 1700 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 DDX60Q8IY21 1712 aaKnown RBP2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 DMDP11532 3685 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 ESPL1Q14674 2120 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 MYO7AQ13402 2215 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 ABCA4P78363 2273 aa2.05□□□□□ -2.08
TM9SF3-202ENST00000443638 TRBV25-1A0A075B6N4 114 aa2.04□□□□□ -2.08
TM9SF3-202ENST00000443638 LOC400499M0QZD8 3231 aa2.04□□□□□ -2.08
TM9SF3-202ENST00000443638 KRTAP12-3P60328 96 aa2.04□□□□□ -2.08
TM9SF3-202ENST00000443638 SNRPFP62306 86 aaKnown RBP2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms