RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FAM19A3Q7Z5A8 133 aa6.87□□□□□ -1.31
USP4-204ENST00000416417 GEMIN7Q9H840 131 aaKnown RBP6.87□□□□□ -1.31
USP4-204ENST00000416417 NXT2Q9NPJ8 142 aaKnown RBP6.87□□□□□ -1.31
USP4-204ENST00000416417 GAGE10A6NGK3 116 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 RPL37AP8A6NKH3 93 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 F8VRH5 84 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 HERVK_113P63121 156 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 ANAPC11Q9NYG5 84 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 A0A087X002 238 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 RPL13AP40429 203 aaKnown RBP6.86□□□□□ -1.31
USP4-204ENST00000416417 TOMM6Q96B49 74 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 SCGB3A1Q96QR1 104 aa6.86□□□□□ -1.31
USP4-204ENST00000416417 SMIM1B2RUZ4 78 aa6.85□□□□□ -1.31
USP4-204ENST00000416417 RAB5BP61020 215 aa6.85□□□□□ -1.31
USP4-204ENST00000416417 LBHQ53QV2 105 aaPredicted RBP6.85□□□□□ -1.31
USP4-204ENST00000416417 MRPL55Q7Z7F7 128 aaKnown RBP6.85□□□□□ -1.31
USP4-204ENST00000416417 TIMM17AQ99595 171 aa6.85□□□□□ -1.31
USP4-204ENST00000416417 NUPR1O60356 82 aa6.84□□□□□ -1.31
USP4-204ENST00000416417 SCO1O75880 301 aa6.84□□□□□ -1.31
USP4-204ENST00000416417 NPSP0C0P6 89 aa6.84□□□□□ -1.31
USP4-204ENST00000416417 SPINK8P0C7L1 97 aa6.84□□□□□ -1.31
USP4-204ENST00000416417 LINC00167Q96N53 147 aa6.84□□□□□ -1.31
USP4-204ENST00000416417 K7EMI3 77 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 BCE1O60756 84 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 RAB14P61106 215 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 SEC11AP67812 179 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 PAPPA-AS1Q5QFB9 102 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 COX7B2Q8TF08 81 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 CARHSP1Q9Y2V2 147 aaKnown RBP6.83□□□□□ -1.32
USP4-204ENST00000416417 MUC2Q02817 5179 aa6.83□□□□□ -1.32
USP4-204ENST00000416417 ERASQ7Z444 233 aa6.82□□□□□ -1.32
USP4-204ENST00000416417 TINCRA0A1B0GVN0 87 aa6.81□□□□□ -1.32
USP4-204ENST00000416417 RPL28P46779 137 aaKnown RBP6.81□□□□□ -1.32
USP4-204ENST00000416417 TP73-AS1Q9UF72 201 aa6.81□□□□□ -1.32
USP4-204ENST00000416417 PDZD11Q5EBL8 140 aa6.81□□□□□ -1.32
USP4-204ENST00000416417 TYMSOSQ8TAI1 123 aa6.81□□□□□ -1.32
USP4-204ENST00000416417 CST9LQ9H4G1 147 aa6.81□□□□□ -1.32
USP4-204ENST00000416417 S100A1P23297 94 aa6.8□□□□□ -1.32
USP4-204ENST00000416417 G0S2P27469 103 aa6.8□□□□□ -1.32
USP4-204ENST00000416417 CXCL5P42830 114 aa6.8□□□□□ -1.32
USP4-204ENST00000416417 IGKV2-28A0A075B6P5 120 aa6.79□□□□□ -1.32
USP4-204ENST00000416417 IGLV5-45A0A087WSX0 123 aa6.79□□□□□ -1.32
USP4-204ENST00000416417 IGKV2D-28P01615 120 aa6.79□□□□□ -1.32
USP4-204ENST00000416417 CRYGAP11844 174 aa6.79□□□□□ -1.32
USP4-204ENST00000416417 KRTAP13-2Q52LG2 175 aa6.79□□□□□ -1.32
USP4-204ENST00000416417 RETNLBQ9BQ08 111 aa6.79□□□□□ -1.32
USP4-204ENST00000416417 PFN2P35080 140 aa6.78□□□□□ -1.32
USP4-204ENST00000416417 UBE2AP49459 152 aa6.77□□□□□ -1.33
USP4-204ENST00000416417 PMVKQ15126 192 aa6.77□□□□□ -1.33
USP4-204ENST00000416417 CLLU1Q5K131 121 aa6.77□□□□□ -1.33
USP4-204ENST00000416417 NKAPP1Q8N9T2 125 aa6.77□□□□□ -1.33
USP4-204ENST00000416417 TMEM218A2RU14 115 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 LINC01546A6NGU7 62 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 FA2HQ7L5A8 372 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 KRTAP13-1Q8IUC0 172 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 IGLV5-37A0A075B6J1 123 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 NDUFA6P56556 154 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 PRLHP81277 87 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 FABP9Q0Z7S8 132 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 NDUFA5Q16718 116 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 ZNF625Q96I27 306 aaPredicted RBP6.76□□□□□ -1.33
USP4-204ENST00000416417 GNB1LQ9BYB4 327 aa6.76□□□□□ -1.33
USP4-204ENST00000416417 MRPL18Q9H0U6 180 aaKnown RBP6.76□□□□□ -1.33
USP4-204ENST00000416417 TMEM238C9JI98 176 aa6.75□□□□□ -1.33
USP4-204ENST00000416417 Q8NDZ9 215 aa6.75□□□□□ -1.33
USP4-204ENST00000416417 SMCO4Q9NRQ5 59 aa6.75□□□□□ -1.33
USP4-204ENST00000416417 TRAV9-1A0A075B6T8 112 aa6.74□□□□□ -1.33
USP4-204ENST00000416417 A0A096LNJ9 63 aa6.74□□□□□ -1.33
USP4-204ENST00000416417 ATP5LO75964 103 aa6.74□□□□□ -1.33
USP4-204ENST00000416417 S100PP25815 95 aa6.74□□□□□ -1.33
USP4-204ENST00000416417 IFITM2Q01629 132 aa6.74□□□□□ -1.33
USP4-204ENST00000416417 PMCHL1Q16048 86 aa6.74□□□□□ -1.33
USP4-204ENST00000416417 H3BRM9 83 aa6.73□□□□□ -1.33
USP4-204ENST00000416417 IGLC3P0DOY3 106 aa6.73□□□□□ -1.33
USP4-204ENST00000416417 VPREB1P12018 145 aa6.73□□□□□ -1.33
USP4-204ENST00000416417 ZNF22P17026 224 aaPredicted RBP6.73□□□□□ -1.33
USP4-204ENST00000416417 FAM19A1Q7Z5A9 133 aa6.73□□□□□ -1.33
USP4-204ENST00000416417 URB1-AS1Q96HZ7 61 aa6.73□□□□□ -1.33
USP4-204ENST00000416417 SND1-IT1Q9HBX3 110 aa6.73□□□□□ -1.33
USP4-204ENST00000416417 IGLV5-39A0A0G2JS06 123 aa6.72□□□□□ -1.33
USP4-204ENST00000416417 UQCC3Q6UW78 93 aa6.71□□□□□ -1.33
USP4-204ENST00000416417 LINC00304Q8N9R0 145 aa6.71□□□□□ -1.33
USP4-204ENST00000416417 TMEM126AQ9H061 195 aa6.71□□□□□ -1.33
USP4-204ENST00000416417 ERG28Q9UKR5 140 aa6.71□□□□□ -1.33
USP4-204ENST00000416417 LINC01549A6NIU2 74 aa6.71□□□□□ -1.34
USP4-204ENST00000416417 C3orf22Q8N5N4 141 aa6.71□□□□□ -1.34
USP4-204ENST00000416417 SEC11CQ9BY50 192 aa6.71□□□□□ -1.34
USP4-204ENST00000416417 IGKV2D-26A0A0A0MRZ7 120 aa6.7□□□□□ -1.34
USP4-204ENST00000416417 M0R378 163 aa6.7□□□□□ -1.34
USP4-204ENST00000416417 COMMD7Q86VX2 200 aa6.7□□□□□ -1.34
USP4-204ENST00000416417 RPS10P5Q9NQ39 176 aa6.7□□□□□ -1.34
USP4-204ENST00000416417 A0A0U1RRA0 63 aa6.69□□□□□ -1.34
USP4-204ENST00000416417 C11orf86A6NJI1 115 aa6.69□□□□□ -1.34
USP4-204ENST00000416417 FAM229BQ4G0N7 80 aa6.69□□□□□ -1.34
USP4-204ENST00000416417 TMEM170BQ5T4T1 132 aa6.68□□□□□ -1.34
USP4-204ENST00000416417 BAGE3Q86Y29 109 aa6.68□□□□□ -1.34
USP4-204ENST00000416417 C18orf32Q8TCD1 76 aa6.68□□□□□ -1.34
USP4-204ENST00000416417 LINC00614P0C842 121 aa6.67□□□□□ -1.34
USP4-204ENST00000416417 COX19Q49B96 90 aa6.67□□□□□ -1.34
USP4-204ENST00000416417 PLEKHB2Q96CS7 222 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms