RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 C6orf223Q8N319 242 aa12.32□□□□□ -0.44
CLN3-206ENST00000360019 HIGD2BQ4VC39 106 aa12.31□□□□□ -0.44
CLN3-206ENST00000360019 CKS1BP61024 79 aa12.3□□□□□ -0.44
CLN3-206ENST00000360019 SNHG12Q9BXW3 62 aa12.3□□□□□ -0.44
CLN3-206ENST00000360019 SPANXB1Q9NS25 103 aaPredicted RBP12.3□□□□□ -0.44
CLN3-206ENST00000360019 EREGO14944 169 aa12.3□□□□□ -0.44
CLN3-206ENST00000360019 ADAMTSL4-AS1Q5T5F5 129 aa12.3□□□□□ -0.44
CLN3-206ENST00000360019 HIST1H4GQ99525 98 aa12.3□□□□□ -0.44
CLN3-206ENST00000360019 COX11Q9Y6N1 276 aa12.3□□□□□ -0.44
CLN3-206ENST00000360019 CXCL5P42830 114 aa12.29□□□□□ -0.44
CLN3-206ENST00000360019 BVES-AS1Q5T3Y7 98 aa12.29□□□□□ -0.44
CLN3-206ENST00000360019 SFTA2Q6UW10 78 aa12.29□□□□□ -0.44
CLN3-206ENST00000360019 LINC00476Q8WZB0 136 aa12.29□□□□□ -0.44
CLN3-206ENST00000360019 TMEM238C9JI98 176 aa12.28□□□□□ -0.44
CLN3-206ENST00000360019 M0R2N4 97 aa12.28□□□□□ -0.44
CLN3-206ENST00000360019 NTN5Q8WTR8 489 aaPredicted RBP12.28□□□□□ -0.44
CLN3-206ENST00000360019 TM2D2Q9BX73 214 aa12.28□□□□□ -0.44
CLN3-206ENST00000360019 GVQW2A0A096LPI5 108 aaPredicted RBP12.27□□□□□ -0.44
CLN3-206ENST00000360019 M0R143 59 aa12.27□□□□□ -0.44
CLN3-206ENST00000360019 TIMM17BO60830 172 aa12.27□□□□□ -0.44
CLN3-206ENST00000360019 LY6G6CO95867 125 aa12.27□□□□□ -0.44
CLN3-206ENST00000360019 SRSF9Q13242 221 aaKnown RBP eCLIP12.27□□□□□ -0.44
CLN3-206ENST00000360019 TAL2Q16559 108 aa12.27□□□□□ -0.44
CLN3-206ENST00000360019 MEIG1Q5JSS6 88 aa12.27□□□□□ -0.44
CLN3-206ENST00000360019 A0A0U1RRA0 63 aa12.27□□□□□ -0.45
CLN3-206ENST00000360019 SMIM13P0DJ93 91 aa12.27□□□□□ -0.45
CLN3-206ENST00000360019 BATFQ16520 125 aa12.27□□□□□ -0.45
CLN3-206ENST00000360019 C10orf25Q5T742 122 aa12.27□□□□□ -0.45
CLN3-206ENST00000360019 USP17L23D6RBM5 183 aa12.26□□□□□ -0.45
CLN3-206ENST00000360019 ZNF561-AS1K7EIQ3 104 aa12.26□□□□□ -0.45
CLN3-206ENST00000360019 GCSHP23434 173 aa12.26□□□□□ -0.45
CLN3-206ENST00000360019 UNQ6190/PRO20217Q6UXQ8 127 aa12.26□□□□□ -0.45
CLN3-206ENST00000360019 CEND1Q8N111 149 aa12.26□□□□□ -0.45
CLN3-206ENST00000360019 DAND5Q8N907 189 aa12.26□□□□□ -0.45
CLN3-206ENST00000360019 FRAS1Q86XX4 4008 aa12.25□□□□□ -0.45
CLN3-206ENST00000360019 FXYD2P54710 66 aa12.25□□□□□ -0.45
CLN3-206ENST00000360019 CIRBPQ14011 172 aaKnown RBP12.25□□□□□ -0.45
CLN3-206ENST00000360019 Q6ZR54 194 aa12.25□□□□□ -0.45
CLN3-206ENST00000360019 SPANXDQ9BXN6 97 aa12.25□□□□□ -0.45
CLN3-206ENST00000360019 SPANXCQ9NY87 97 aa12.25□□□□□ -0.45
CLN3-206ENST00000360019 LECT2O14960 151 aa12.24□□□□□ -0.45
CLN3-206ENST00000360019 ERG28Q9UKR5 140 aa12.24□□□□□ -0.45
CLN3-206ENST00000360019 PSCAO43653 123 aa12.23□□□□□ -0.45
CLN3-206ENST00000360019 WFDC2Q14508 124 aa12.23□□□□□ -0.45
CLN3-206ENST00000360019 Q6ZRN7 208 aaPredicted RBP12.23□□□□□ -0.45
CLN3-206ENST00000360019 PFN2P35080 140 aa12.23□□□□□ -0.45
CLN3-206ENST00000360019 C9orf116Q5BN46 136 aaPredicted RBP12.23□□□□□ -0.45
CLN3-206ENST00000360019 C2orf48Q96LS8 159 aa12.23□□□□□ -0.45
CLN3-206ENST00000360019 CAMK2N2Q96S95 79 aa12.22□□□□□ -0.45
CLN3-206ENST00000360019 EIF4EBP3O60516 100 aaPredicted RBP12.21□□□□□ -0.45
CLN3-206ENST00000360019 NPC2P61916 151 aa12.21□□□□□ -0.45
CLN3-206ENST00000360019 Q6ZVH6 145 aa12.21□□□□□ -0.45
CLN3-206ENST00000360019 MUSTN1Q8IVN3 82 aa12.21□□□□□ -0.45
CLN3-206ENST00000360019 C6orf48Q9UBA6 75 aa12.21□□□□□ -0.45
CLN3-206ENST00000360019 LINC00158P58513 81 aa12.21□□□□□ -0.46
CLN3-206ENST00000360019 Q6ZRU5 148 aa12.21□□□□□ -0.46
CLN3-206ENST00000360019 MIR7-3HGQ8N6C7 128 aa12.21□□□□□ -0.46
CLN3-206ENST00000360019 FAT2Q9NYQ8 4349 aa12.2□□□□□ -0.46
CLN3-206ENST00000360019 DNAH11Q96DT5 4516 aa12.19□□□□□ -0.46
CLN3-206ENST00000360019 SLPIP03973 132 aa12.18□□□□□ -0.46
CLN3-206ENST00000360019 PTTG1IPP53801 180 aa12.18□□□□□ -0.46
CLN3-206ENST00000360019 SOSTDC1Q6X4U4 206 aa12.18□□□□□ -0.46
CLN3-206ENST00000360019 LINC00308Q8TCZ7 52 aa12.18□□□□□ -0.46
CLN3-206ENST00000360019 TRBV30A0A0K0K1B3 111 aa12.17□□□□□ -0.46
CLN3-206ENST00000360019 F8WDY8 70 aa12.17□□□□□ -0.46
CLN3-206ENST00000360019 COX17Q14061 63 aa12.17□□□□□ -0.46
CLN3-206ENST00000360019 SYCNQ0VAF6 134 aa12.16□□□□□ -0.46
CLN3-206ENST00000360019 KMT2CQ8NEZ4 4911 aaKnown RBP12.16□□□□□ -0.46
CLN3-206ENST00000360019 HECTD4Q9Y4D8 3996 aa12.16□□□□□ -0.46
CLN3-206ENST00000360019 LRCOL1A6NCL2 159 aa12.16□□□□□ -0.46
CLN3-206ENST00000360019 IFITM1P13164 125 aa12.16□□□□□ -0.46
CLN3-206ENST00000360019 A4D1N5 150 aa12.15□□□□□ -0.46
CLN3-206ENST00000360019 RPL24P83731 157 aaKnown RBP12.14□□□□□ -0.47
CLN3-206ENST00000360019 NHP2Q9NX24 153 aaKnown RBP12.14□□□□□ -0.47
CLN3-206ENST00000360019 RYR2Q92736 4967 aa12.14□□□□□ -0.47
CLN3-206ENST00000360019 CARD19Q96LW7 228 aa12.14□□□□□ -0.47
CLN3-206ENST00000360019 TMEM238LA0A1B0GVL6 79 aa12.13□□□□□ -0.47
CLN3-206ENST00000360019 A6NJY4 79 aa12.13□□□□□ -0.47
CLN3-206ENST00000360019 K7ERJ3 54 aa12.13□□□□□ -0.47
CLN3-206ENST00000360019 COL5A1-AS1Q5SY13 56 aa12.13□□□□□ -0.47
CLN3-206ENST00000360019 A6NDN8 102 aa12.12□□□□□ -0.47
CLN3-206ENST00000360019 C1orf134Q5TEV5 83 aa12.11□□□□□ -0.47
CLN3-206ENST00000360019 DNAH5Q8TE73 4624 aa12.11□□□□□ -0.47
CLN3-206ENST00000360019 A0A1B0GWB2 263 aa12.11□□□□□ -0.47
CLN3-206ENST00000360019 LBHQ53QV2 105 aaPredicted RBP12.11□□□□□ -0.47
CLN3-206ENST00000360019 PPDPFQ9H3Y8 114 aa12.11□□□□□ -0.47
CLN3-206ENST00000360019 CFC1BP0CG36 223 aa12.1□□□□□ -0.47
CLN3-206ENST00000360019 CFC1P0CG37 223 aa12.1□□□□□ -0.47
CLN3-206ENST00000360019 COPS9Q8WXC6 57 aa12.1□□□□□ -0.47
CLN3-206ENST00000360019 SND1-IT1Q9HBX3 110 aa12.1□□□□□ -0.47
CLN3-206ENST00000360019 C14orf177Q52M58 125 aa12.09□□□□□ -0.47
CLN3-206ENST00000360019 RNF151Q2KHN1 245 aa12.09□□□□□ -0.47
CLN3-206ENST00000360019 LOC107984156A0A0G2JMH3 177 aa12.08□□□□□ -0.48
CLN3-206ENST00000360019 NDUFC2-KCTD14E9PQ53 114 aa12.08□□□□□ -0.48
CLN3-206ENST00000360019 CNBPP62633 177 aaKnown RBP12.08□□□□□ -0.48
CLN3-206ENST00000360019 ARL17AQ8IVW1 177 aa12.08□□□□□ -0.48
CLN3-206ENST00000360019 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.07□□□□□ -0.48
CLN3-206ENST00000360019 A0A087WTM6 91 aa12.07□□□□□ -0.48
CLN3-206ENST00000360019 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.07□□□□□ -0.48
CLN3-206ENST00000360019 TAX1BP3O14907 124 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms