RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 CRIP1P50238 77 aa7.36□□□□□ -1.23
CLIP1-202ENST00000358808 CRIP3Q6Q6R5 217 aa7.36□□□□□ -1.23
CLIP1-202ENST00000358808 TRAV7A0A075B6U4 112 aa7.36□□□□□ -1.23
CLIP1-202ENST00000358808 CCDC179H3BU77 68 aa7.35□□□□□ -1.23
CLIP1-202ENST00000358808 Q8N814 137 aa7.35□□□□□ -1.23
CLIP1-202ENST00000358808 COL4A2P08572 1712 aa7.35□□□□□ -1.23
CLIP1-202ENST00000358808 PRR9Q5T870 116 aa7.35□□□□□ -1.23
CLIP1-202ENST00000358808 NAV2Q8IVL1 2488 aa7.34□□□□□ -1.23
CLIP1-202ENST00000358808 CRIP2P52943 208 aaPredicted RBP7.34□□□□□ -1.23
CLIP1-202ENST00000358808 SPACA4Q8TDM5 124 aa7.34□□□□□ -1.23
CLIP1-202ENST00000358808 Q6ZS46 218 aa7.34□□□□□ -1.23
CLIP1-202ENST00000358808 CHCHD7Q9BUK0 85 aa7.34□□□□□ -1.23
CLIP1-202ENST00000358808 PRR3P79522 188 aaKnown RBP7.34□□□□□ -1.24
CLIP1-202ENST00000358808 PIEZO2Q9H5I5 2752 aa7.33□□□□□ -1.24
CLIP1-202ENST00000358808 LINC00575Q6W349 94 aa7.33□□□□□ -1.24
CLIP1-202ENST00000358808 ARHGAP32A7KAX9 2087 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 LINC00694P0DN24 101 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 PCNX3Q9H6A9 2034 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 NRACQ8N912 160 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 KLLNB2CW77 178 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 C2orf91Q6ZV80 131 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 FAM229AH3BQW9 127 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 KRTAP10-9P60411 292 aa7.32□□□□□ -1.24
CLIP1-202ENST00000358808 IGLV1-40P01703 118 aa7.31□□□□□ -1.24
CLIP1-202ENST00000358808 A0A087WYN8 130 aa7.31□□□□□ -1.24
CLIP1-202ENST00000358808 CDSNQ15517 529 aa7.31□□□□□ -1.24
CLIP1-202ENST00000358808 SERTAD4-AS1Q5TG53 156 aa7.3□□□□□ -1.24
CLIP1-202ENST00000358808 EIF4EBP1Q13541 118 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-202ENST00000358808 A0A087WVE0 104 aa7.3□□□□□ -1.24
CLIP1-202ENST00000358808 A0A1B0GU69 56 aa7.3□□□□□ -1.24
CLIP1-202ENST00000358808 J3QL48 77 aa7.3□□□□□ -1.24
CLIP1-202ENST00000358808 NHLRC4P0CG21 123 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-202ENST00000358808 KIAA1549Q9HCM3 1950 aa7.29□□□□□ -1.24
CLIP1-202ENST00000358808 LINC00242Q5T6M2 205 aa7.29□□□□□ -1.24
CLIP1-202ENST00000358808 IGLV4-60A0A075B6I1 120 aa7.29□□□□□ -1.24
CLIP1-202ENST00000358808 C11orf21Q9P2W6 132 aa7.29□□□□□ -1.24
CLIP1-202ENST00000358808 F8WDY8 70 aa7.28□□□□□ -1.24
CLIP1-202ENST00000358808 Q8N3U1 123 aa7.28□□□□□ -1.24
CLIP1-202ENST00000358808 GAS8-AS1O95177 125 aa7.28□□□□□ -1.24
CLIP1-202ENST00000358808 Q8N6K4 173 aa7.28□□□□□ -1.24
CLIP1-202ENST00000358808 C1orf64Q8NEQ6 169 aa7.28□□□□□ -1.24
CLIP1-202ENST00000358808 POLR2KP53803 58 aaKnown RBP7.28□□□□□ -1.24
CLIP1-202ENST00000358808 DSCAMO60469 2012 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 EDN2P20800 178 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 ODF3L2Q3SX64 289 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 SMCR5Q8TEV8 140 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 Q9UF83 564 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 FHL2Q14192 279 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 SPINT4Q6UDR6 99 aa7.27□□□□□ -1.25
CLIP1-202ENST00000358808 SMIM1B2RUZ4 78 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 ACYP2P14621 99 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 ATG2AQ2TAZ0 1938 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 AVPP01185 164 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 SPAG11AQ6PDA7 123 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 Q8N2B8 174 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 LYPD5Q6UWN5 251 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 IGLV1-51P01701 117 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 MDFIQ99750 246 aa7.26□□□□□ -1.25
CLIP1-202ENST00000358808 COX6B2Q6YFQ2 88 aa7.25□□□□□ -1.25
CLIP1-202ENST00000358808 MOBPQ13875 183 aa7.25□□□□□ -1.25
CLIP1-202ENST00000358808 LINC00310P59036 64 aa7.24□□□□□ -1.25
CLIP1-202ENST00000358808 SETD2Q9BYW2 2564 aaPredicted RBP7.24□□□□□ -1.25
CLIP1-202ENST00000358808 PRRC2AP48634 2157 aaKnown RBP7.24□□□□□ -1.25
CLIP1-202ENST00000358808 C22orf24Q9Y442 160 aa7.24□□□□□ -1.25
CLIP1-202ENST00000358808 Q6ZRU5 148 aa7.23□□□□□ -1.25
CLIP1-202ENST00000358808 NCOR2Q9Y618 2525 aa7.23□□□□□ -1.25
CLIP1-202ENST00000358808 HCFC1P51610 2035 aa7.23□□□□□ -1.25
CLIP1-202ENST00000358808 WDR87Q6ZQQ6 2873 aa7.23□□□□□ -1.25
CLIP1-202ENST00000358808 TLN2Q9Y4G6 2542 aa7.23□□□□□ -1.25
CLIP1-202ENST00000358808 IGF2RP11717 2491 aa7.22□□□□□ -1.25
CLIP1-202ENST00000358808 C16orf95Q9H693 158 aa7.22□□□□□ -1.25
CLIP1-202ENST00000358808 ZNF462Q96JM2 2506 aa7.22□□□□□ -1.25
CLIP1-202ENST00000358808 JMJD1CQ15652 2540 aa7.21□□□□□ -1.25
CLIP1-202ENST00000358808 IGIPA6NJ69 53 aa7.21□□□□□ -1.26
CLIP1-202ENST00000358808 A8MTW9 85 aa7.21□□□□□ -1.26
CLIP1-202ENST00000358808 TMEM254Q8TBM7 123 aa7.21□□□□□ -1.26
CLIP1-202ENST00000358808 C16orf90A8MZG2 172 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 ATP11AUNQ6ZP68 121 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 TYMSOSQ8TAI1 123 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 C6orf48Q9UBA6 75 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 EML5Q05BV3 1969 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 IGLV8-61A0A075B6I0 122 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 FHL3Q13643 280 aa7.2□□□□□ -1.26
CLIP1-202ENST00000358808 URB1-AS1Q96HZ7 61 aa7.19□□□□□ -1.26
CLIP1-202ENST00000358808 TLN1Q9Y490 2541 aaKnown RBP7.19□□□□□ -1.26
CLIP1-202ENST00000358808 SMIM29Q86T20 159 aa7.19□□□□□ -1.26
CLIP1-202ENST00000358808 LINC00313P59037 77 aa7.17□□□□□ -1.26
CLIP1-202ENST00000358808 KIAA0087Q14695 138 aa7.17□□□□□ -1.26
CLIP1-202ENST00000358808 PIEZO1Q92508 2521 aa7.16□□□□□ -1.26
CLIP1-202ENST00000358808 TP53AIP1Q9HCN2 124 aa7.16□□□□□ -1.26
CLIP1-202ENST00000358808 Q96NJ1 140 aa7.16□□□□□ -1.26
CLIP1-202ENST00000358808 ADAMTSL4-AS1Q5T5F5 129 aa7.16□□□□□ -1.26
CLIP1-202ENST00000358808 USP9XQ93008 2570 aaPredicted RBP7.16□□□□□ -1.26
CLIP1-202ENST00000358808 ZFYVE26Q68DK2 2539 aa7.15□□□□□ -1.26
CLIP1-202ENST00000358808 FN1P02751 2386 aaKnown RBP7.15□□□□□ -1.26
CLIP1-202ENST00000358808 A0A1B0GUV1 79 aa7.15□□□□□ -1.26
CLIP1-202ENST00000358808 TSPEAR-AS2P59090 65 aa7.15□□□□□ -1.27
CLIP1-202ENST00000358808 ABCA12Q86UK0 2595 aa7.14□□□□□ -1.27
CLIP1-202ENST00000358808 RTL8CO15255 209 aa7.14□□□□□ -1.27
CLIP1-202ENST00000358808 CHTF8P0CG12 524 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms