RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 C10orf25Q5T742 122 aa12.4□□□□□ -0.42
CHMP4A-201ENST00000347519 DNAH5Q8TE73 4624 aa12.4□□□□□ -0.43
CHMP4A-201ENST00000347519 FUSP35637 526 aaKnown RBP eCLIP12.39□□□□□ -0.43
CHMP4A-201ENST00000347519 UNQ6190/PRO20217Q6UXQ8 127 aa12.39□□□□□ -0.43
CHMP4A-201ENST00000347519 PCP2Q8IVA1 136 aa12.39□□□□□ -0.43
CHMP4A-201ENST00000347519 Q8N814 137 aa12.39□□□□□ -0.43
CHMP4A-201ENST00000347519 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.38□□□□□ -0.43
CHMP4A-201ENST00000347519 LGALS3P17931 250 aaKnown RBP12.37□□□□□ -0.43
CHMP4A-201ENST00000347519 Q6ZRU5 148 aa12.37□□□□□ -0.43
CHMP4A-201ENST00000347519 ZNF625Q96I27 306 aaPredicted RBP12.37□□□□□ -0.43
CHMP4A-201ENST00000347519 C2orf48Q96LS8 159 aa12.37□□□□□ -0.43
CHMP4A-201ENST00000347519 TP73-AS1Q9UF72 201 aa12.37□□□□□ -0.43
CHMP4A-201ENST00000347519 C14orf177Q52M58 125 aa12.36□□□□□ -0.43
CHMP4A-201ENST00000347519 CAMK2N2Q96S95 79 aa12.36□□□□□ -0.43
CHMP4A-201ENST00000347519 NDUFA12Q9UI09 145 aa12.36□□□□□ -0.43
CHMP4A-201ENST00000347519 NDUFA1O15239 70 aa12.34□□□□□ -0.43
CHMP4A-201ENST00000347519 CKS1BP61024 79 aa12.34□□□□□ -0.43
CHMP4A-201ENST00000347519 SYCNQ0VAF6 134 aa12.34□□□□□ -0.43
CHMP4A-201ENST00000347519 C6orf48Q9UBA6 75 aa12.34□□□□□ -0.43
CHMP4A-201ENST00000347519 CTAG1AP78358 180 aa12.33□□□□□ -0.44
CHMP4A-201ENST00000347519 C14orf144Q96I85 54 aa12.33□□□□□ -0.44
CHMP4A-201ENST00000347519 C12orf57Q99622 126 aa12.33□□□□□ -0.44
CHMP4A-201ENST00000347519 ZNF815PA8K554 130 aa12.32□□□□□ -0.44
CHMP4A-201ENST00000347519 CXCL5P42830 114 aa12.32□□□□□ -0.44
CHMP4A-201ENST00000347519 C9orf116Q5BN46 136 aaPredicted RBP12.32□□□□□ -0.44
CHMP4A-201ENST00000347519 LINC00518Q8N0U6 118 aa12.32□□□□□ -0.44
CHMP4A-201ENST00000347519 CNBPP62633 177 aaKnown RBP12.31□□□□□ -0.44
CHMP4A-201ENST00000347519 S100A12P80511 92 aa12.31□□□□□ -0.44
CHMP4A-201ENST00000347519 LINC00336Q6ZUF6 198 aa12.31□□□□□ -0.44
CHMP4A-201ENST00000347519 CARD19Q96LW7 228 aa12.31□□□□□ -0.44
CHMP4A-201ENST00000347519 MYMXA0A1B0GTQ4 84 aa12.3□□□□□ -0.44
CHMP4A-201ENST00000347519 F8WDY8 70 aa12.3□□□□□ -0.44
CHMP4A-201ENST00000347519 COX8AP10176 69 aa12.3□□□□□ -0.44
CHMP4A-201ENST00000347519 KRTAP10-2P60368 255 aa12.3□□□□□ -0.44
CHMP4A-201ENST00000347519 DNAH8Q96JB1 4490 aa12.3□□□□□ -0.44
CHMP4A-201ENST00000347519 A0A0J9YXY3 114 aa12.29□□□□□ -0.44
CHMP4A-201ENST00000347519 EREGO14944 169 aa12.29□□□□□ -0.44
CHMP4A-201ENST00000347519 LINC01620Q4KN68 170 aa12.29□□□□□ -0.44
CHMP4A-201ENST00000347519 BOD1L2Q8IYS8 172 aa12.29□□□□□ -0.44
CHMP4A-201ENST00000347519 PRO1933Q9H354 126 aa12.28□□□□□ -0.44
CHMP4A-201ENST00000347519 TRBV30A0A0K0K1B3 111 aa12.27□□□□□ -0.45
CHMP4A-201ENST00000347519 A0A1B0GVY2 172 aa12.27□□□□□ -0.45
CHMP4A-201ENST00000347519 DYNC1H1Q14204 4646 aaKnown RBP12.27□□□□□ -0.45
CHMP4A-201ENST00000347519 HERV-K104P63124 156 aa12.26□□□□□ -0.45
CHMP4A-201ENST00000347519 A0A0U1RRA0 63 aa12.25□□□□□ -0.45
CHMP4A-201ENST00000347519 SMIM13P0DJ93 91 aa12.25□□□□□ -0.45
CHMP4A-201ENST00000347519 RNF151Q2KHN1 245 aa12.25□□□□□ -0.45
CHMP4A-201ENST00000347519 SFTA2Q6UW10 78 aa12.25□□□□□ -0.45
CHMP4A-201ENST00000347519 C9orf163Q8N9P6 203 aa12.25□□□□□ -0.45
CHMP4A-201ENST00000347519 ERG28Q9UKR5 140 aa12.25□□□□□ -0.45
CHMP4A-201ENST00000347519 IGLV5-52A0A0A0MRZ9 124 aa12.24□□□□□ -0.45
CHMP4A-201ENST00000347519 DLEU1O43261 78 aa12.24□□□□□ -0.45
CHMP4A-201ENST00000347519 PFN2P35080 140 aa12.24□□□□□ -0.45
CHMP4A-201ENST00000347519 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.23□□□□□ -0.45
CHMP4A-201ENST00000347519 MEIG1Q5JSS6 88 aa12.23□□□□□ -0.45
CHMP4A-201ENST00000347519 SLC25A34Q6PIV7 304 aa12.23□□□□□ -0.45
CHMP4A-201ENST00000347519 LITAFQ99732 161 aa12.23□□□□□ -0.45
CHMP4A-201ENST00000347519 ADAMTSL4-AS1Q5T5F5 129 aa12.22□□□□□ -0.45
CHMP4A-201ENST00000347519 C2orf91Q6ZV80 131 aa12.21□□□□□ -0.45
CHMP4A-201ENST00000347519 LINC00158P58513 81 aa12.2□□□□□ -0.46
CHMP4A-201ENST00000347519 SCGB1D4Q6XE38 83 aa12.2□□□□□ -0.46
CHMP4A-201ENST00000347519 Q6ZRP5 223 aa12.2□□□□□ -0.46
CHMP4A-201ENST00000347519 DAND5Q8N907 189 aa12.2□□□□□ -0.46
CHMP4A-201ENST00000347519 SDIM1Q6ZPB5 146 aa12.19□□□□□ -0.46
CHMP4A-201ENST00000347519 PGPEP1Q9NXJ5 209 aa12.19□□□□□ -0.46
CHMP4A-201ENST00000347519 LRP1BQ9NZR2 4599 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 NDUFC2-KCTD14E9PQ53 114 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 TLX1NBP0CAT3 122 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 PKHD1P08F94 4074 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 LOC107984640A0A0U1RRK4 108 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 TIMM17BO60830 172 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 RPL18AQ02543 176 aaKnown RBP12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 MIR7-3HGQ8N6C7 128 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 UQCR10Q9UDW1 63 aa12.18□□□□□ -0.46
CHMP4A-201ENST00000347519 A0A096LNI7 61 aa12.17□□□□□ -0.46
CHMP4A-201ENST00000347519 EIF4EBP3O60516 100 aaPredicted RBP12.17□□□□□ -0.46
CHMP4A-201ENST00000347519 COX17Q14061 63 aa12.17□□□□□ -0.46
CHMP4A-201ENST00000347519 GAGE2EQ4V326 116 aa12.17□□□□□ -0.46
CHMP4A-201ENST00000347519 GAGE2DQ9UEU5 116 aa12.17□□□□□ -0.46
CHMP4A-201ENST00000347519 CHTF8P0CG12 524 aa12.16□□□□□ -0.46
CHMP4A-201ENST00000347519 GAGE2BQ13066 116 aa12.16□□□□□ -0.46
CHMP4A-201ENST00000347519 MIEN1Q9BRT3 115 aa12.16□□□□□ -0.46
CHMP4A-201ENST00000347519 PANO1I0J062 215 aa12.15□□□□□ -0.46
CHMP4A-201ENST00000347519 KRTAP10-1P60331 282 aa12.15□□□□□ -0.46
CHMP4A-201ENST00000347519 SOSTDC1Q6X4U4 206 aa12.15□□□□□ -0.46
CHMP4A-201ENST00000347519 SND1-IT1Q9HBX3 110 aa12.15□□□□□ -0.46
CHMP4A-201ENST00000347519 XAGE1AQ9HD64 81 aa12.15□□□□□ -0.46
CHMP4A-201ENST00000347519 LINC00587B1AMM8 73 aa12.14□□□□□ -0.47
CHMP4A-201ENST00000347519 GCSHP23434 173 aa12.14□□□□□ -0.47
CHMP4A-201ENST00000347519 NPC2P61916 151 aa12.14□□□□□ -0.47
CHMP4A-201ENST00000347519 CIRBPQ14011 172 aaKnown RBP12.14□□□□□ -0.47
CHMP4A-201ENST00000347519 HIGD1BQ9P298 99 aa12.14□□□□□ -0.47
CHMP4A-201ENST00000347519 IGKV2-24A0A0C4DH68 120 aa12.13□□□□□ -0.47
CHMP4A-201ENST00000347519 PTTG1IPP53801 180 aa12.13□□□□□ -0.47
CHMP4A-201ENST00000347519 C9orf129Q5T035 196 aaKnown RBP12.13□□□□□ -0.47
CHMP4A-201ENST00000347519 SPANXDQ9BXN6 97 aa12.13□□□□□ -0.47
CHMP4A-201ENST00000347519 SPANXCQ9NY87 97 aa12.13□□□□□ -0.47
CHMP4A-201ENST00000347519 TMEM238C9JI98 176 aa12.12□□□□□ -0.47
CHMP4A-201ENST00000347519 SPANXB1Q9NS25 103 aaPredicted RBP12.12□□□□□ -0.47
CHMP4A-201ENST00000347519 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms