RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SND1-IT1Q9HBX3 110 aa7.16□□□□□ -1.26
LIMA1-201ENST00000341247 NOTCH1P46531 2555 aa7.16□□□□□ -1.26
LIMA1-201ENST00000341247 XGP55808 180 aa7.15□□□□□ -1.26
LIMA1-201ENST00000341247 SS18Q15532 418 aa7.15□□□□□ -1.26
LIMA1-201ENST00000341247 RETNQ9HD89 108 aa7.15□□□□□ -1.26
LIMA1-201ENST00000341247 A0A087WZ39 114 aa7.15□□□□□ -1.26
LIMA1-201ENST00000341247 LST1O00453 97 aa7.15□□□□□ -1.27
LIMA1-201ENST00000341247 LYRM9A8MSI8 78 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 LINC00337Q8N6G1 96 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 LINC00526Q96FQ7 95 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 CYSRT1A8MQ03 144 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 OR13C6PQ8NH95 151 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 CCL18P55774 89 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 UBE2WQ96B02 151 aa7.14□□□□□ -1.27
LIMA1-201ENST00000341247 NBEAL1Q6ZS30 2694 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 CRPP02741 224 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 ATP5G1P05496 136 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 Q8NAQ8 132 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 RNF183Q96D59 192 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 Q9HAA7 133 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 COPS9Q8WXC6 57 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 FAM218AQ96MZ4 157 aa7.13□□□□□ -1.27
LIMA1-201ENST00000341247 IGKV2-28A0A075B6P5 120 aa7.12□□□□□ -1.27
LIMA1-201ENST00000341247 IGKV2D-28P01615 120 aa7.12□□□□□ -1.27
LIMA1-201ENST00000341247 C9orf116Q5BN46 136 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-201ENST00000341247 PRR3P79522 188 aaKnown RBP7.12□□□□□ -1.27
LIMA1-201ENST00000341247 CHCHD10Q8WYQ3 142 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-201ENST00000341247 COX7A2LO14548 114 aa7.12□□□□□ -1.27
LIMA1-201ENST00000341247 REG3AQ06141 175 aa7.12□□□□□ -1.27
LIMA1-201ENST00000341247 COL6A5A8TX70 2615 aa7.12□□□□□ -1.27
LIMA1-201ENST00000341247 CSMD3Q7Z407 3707 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 SPART-AS1P0CW21 52 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 MALP21145 153 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 CKS1BP61024 79 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 A0A1B0GUV1 79 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 A0A1B0GV72 72 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 SHISA2Q6UWI4 295 aa7.11□□□□□ -1.27
LIMA1-201ENST00000341247 TRAV8-4A0A0B4J246 113 aa7.1□□□□□ -1.27
LIMA1-201ENST00000341247 KLK12Q9UKR0 248 aa7.1□□□□□ -1.27
LIMA1-201ENST00000341247 MIFP14174 115 aa7.1□□□□□ -1.27
LIMA1-201ENST00000341247 IBA57-AS1B1ANH7 110 aa7.09□□□□□ -1.27
LIMA1-201ENST00000341247 SMIM11BQ8TCY0 68 aa7.09□□□□□ -1.27
LIMA1-201ENST00000341247 COL7A1Q02388 2944 aa7.09□□□□□ -1.27
LIMA1-201ENST00000341247 TRAV13-2A0A0B4J235 113 aa7.09□□□□□ -1.27
LIMA1-201ENST00000341247 CFAP161Q6P656 301 aa7.09□□□□□ -1.27
LIMA1-201ENST00000341247 H3BT86 120 aa7.09□□□□□ -1.28
LIMA1-201ENST00000341247 C6orf223Q8N319 242 aa7.09□□□□□ -1.28
LIMA1-201ENST00000341247 KRTAP10-11P60412 298 aa7.08□□□□□ -1.28
LIMA1-201ENST00000341247 MRPL23Q16540 153 aaKnown RBP7.08□□□□□ -1.28
LIMA1-201ENST00000341247 WFDC9Q8NEX5 89 aa7.08□□□□□ -1.28
LIMA1-201ENST00000341247 BAALC-AS2P0C853 105 aa7.07□□□□□ -1.28
LIMA1-201ENST00000341247 BAHCC1Q9P281 2608 aa7.07□□□□□ -1.28
LIMA1-201ENST00000341247 HUWE1Q7Z6Z7 4374 aaKnown RBP7.07□□□□□ -1.28
LIMA1-201ENST00000341247 A0A087WYN8 130 aa7.07□□□□□ -1.28
LIMA1-201ENST00000341247 TTC32Q5I0X7 151 aa7.07□□□□□ -1.28
LIMA1-201ENST00000341247 CD164L2Q6UWJ8 174 aa7.07□□□□□ -1.28
LIMA1-201ENST00000341247 Q8IZM0 81 aa7.06□□□□□ -1.28
LIMA1-201ENST00000341247 M0QXV9 152 aa7.06□□□□□ -1.28
LIMA1-201ENST00000341247 PRB2P02812 416 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-201ENST00000341247 SLPIP03973 132 aa7.06□□□□□ -1.28
LIMA1-201ENST00000341247 KRTAP24-1Q3LI83 254 aa7.06□□□□□ -1.28
LIMA1-201ENST00000341247 C10orf25Q5T742 122 aa7.05□□□□□ -1.28
LIMA1-201ENST00000341247 C3orf56Q8N813 242 aa7.05□□□□□ -1.28
LIMA1-201ENST00000341247 KIAA0087Q14695 138 aa7.05□□□□□ -1.28
LIMA1-201ENST00000341247 UNQ6190/PRO20217Q6UXQ8 127 aa7.05□□□□□ -1.28
LIMA1-201ENST00000341247 C15orf53Q8NAA6 179 aa7.05□□□□□ -1.28
LIMA1-201ENST00000341247 RPL28P46779 137 aaKnown RBP7.04□□□□□ -1.28
LIMA1-201ENST00000341247 Q6ZTC4 211 aa7.04□□□□□ -1.28
LIMA1-201ENST00000341247 LECT2O14960 151 aa7.04□□□□□ -1.28
LIMA1-201ENST00000341247 SNCGO76070 127 aa7.04□□□□□ -1.28
LIMA1-201ENST00000341247 NCR3O14931 201 aa7.04□□□□□ -1.28
LIMA1-201ENST00000341247 DNAL4O96015 105 aa7.04□□□□□ -1.28
LIMA1-201ENST00000341247 LELP1Q5T871 98 aa7.04□□□□□ -1.28
LIMA1-201ENST00000341247 DNAH7Q8WXX0 4024 aa7.03□□□□□ -1.28
LIMA1-201ENST00000341247 SPAG11BQ08648 103 aa7.03□□□□□ -1.28
LIMA1-201ENST00000341247 WFDC10BQ8IUB3 73 aa7.03□□□□□ -1.28
LIMA1-201ENST00000341247 SCGB1A1P11684 91 aa7.03□□□□□ -1.28
LIMA1-201ENST00000341247 LYPD5Q6UWN5 251 aa7.03□□□□□ -1.28
LIMA1-201ENST00000341247 TRACP01848 142 aa7.02□□□□□ -1.29
LIMA1-201ENST00000341247 DNAH10Q8IVF4 4471 aa7.02□□□□□ -1.29
LIMA1-201ENST00000341247 DNAH1Q9P2D7 4330 aa7.02□□□□□ -1.29
LIMA1-201ENST00000341247 C9orf129Q5T035 196 aaKnown RBP7.02□□□□□ -1.29
LIMA1-201ENST00000341247 KPRPQ5T749 579 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-201ENST00000341247 ENHOQ6UWT2 76 aa7.02□□□□□ -1.29
LIMA1-201ENST00000341247 Q8NDZ9 215 aa7.02□□□□□ -1.29
LIMA1-201ENST00000341247 NANOS2P60321 138 aaKnown RBP7.01□□□□□ -1.29
LIMA1-201ENST00000341247 HIGD2BQ4VC39 106 aa7.01□□□□□ -1.29
LIMA1-201ENST00000341247 C22orf24Q9Y442 160 aa7.01□□□□□ -1.29
LIMA1-201ENST00000341247 A0A0J9YWU9 116 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 GAGE2BQ13066 116 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 GAGE2EQ4V326 116 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 GAGE2AQ6NT46 116 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 GAGE2DQ9UEU5 116 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 LINC01600Q96MT4 127 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 XAGE1AQ9HD64 81 aa7□□□□□ -1.29
LIMA1-201ENST00000341247 C14orf132Q9NPU4 83 aa6.99□□□□□ -1.29
LIMA1-201ENST00000341247 DNAH9Q9NYC9 4486 aa6.98□□□□□ -1.29
LIMA1-201ENST00000341247 MRAPQ8TCY5 172 aa6.98□□□□□ -1.29
LIMA1-201ENST00000341247 WIPF1O43516 503 aa6.98□□□□□ -1.29
LIMA1-201ENST00000341247 S100A7L2Q5SY68 101 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms