RNA–Protein interactions for RNA: ENST00000334690.10

TRAPPC11-201, Transcript of trafficking protein particle complex 11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-201ENST00000334690 LOC107984640A0A0U1RRK4 108 aa12.17□□□□□ -0.46
TRAPPC11-201ENST00000334690 FAM19A3Q7Z5A8 133 aa12.17□□□□□ -0.46
TRAPPC11-201ENST00000334690 Q8N814 137 aa12.17□□□□□ -0.46
TRAPPC11-201ENST00000334690 CEP350Q5VT06 3117 aa12.17□□□□□ -0.46
TRAPPC11-201ENST00000334690 FAM19A4Q96LR4 140 aa12.16□□□□□ -0.46
TRAPPC11-201ENST00000334690 SMR3AQ99954 134 aa12.16□□□□□ -0.46
TRAPPC11-201ENST00000334690 M0QXV9 152 aa12.15□□□□□ -0.46
TRAPPC11-201ENST00000334690 CCDC179H3BU77 68 aa12.15□□□□□ -0.46
TRAPPC11-201ENST00000334690 C9orf116Q5BN46 136 aaPredicted RBP12.15□□□□□ -0.47
TRAPPC11-201ENST00000334690 IGKV4-1P06312 121 aa12.14□□□□□ -0.47
TRAPPC11-201ENST00000334690 NANOS2P60321 138 aaKnown RBP12.14□□□□□ -0.47
TRAPPC11-201ENST00000334690 Q8N2B8 174 aa12.14□□□□□ -0.47
TRAPPC11-201ENST00000334690 C11orf72Q8NBR9 251 aa12.14□□□□□ -0.47
TRAPPC11-201ENST00000334690 A0A0J9YWU9 116 aa12.13□□□□□ -0.47
TRAPPC11-201ENST00000334690 TRBV10-3A0A0K0K1G6 114 aa12.13□□□□□ -0.47
TRAPPC11-201ENST00000334690 ATP5EP56381 51 aaPredicted RBP12.13□□□□□ -0.47
TRAPPC11-201ENST00000334690 LINC01561Q8N1V8 128 aa12.13□□□□□ -0.47
TRAPPC11-201ENST00000334690 PTPRBP23467 1997 aa12.12□□□□□ -0.47
TRAPPC11-201ENST00000334690 IGLV5-39A0A0G2JS06 123 aa12.11□□□□□ -0.47
TRAPPC11-201ENST00000334690 MUC4Q99102 2169 aa12.11□□□□□ -0.47
TRAPPC11-201ENST00000334690 A0A087WYN8 130 aa12.1□□□□□ -0.47
TRAPPC11-201ENST00000334690 RPL37AP8A6NKH3 93 aa12.1□□□□□ -0.47
TRAPPC11-201ENST00000334690 PRR3P79522 188 aaKnown RBP12.1□□□□□ -0.47
TRAPPC11-201ENST00000334690 BRK1Q8WUW1 75 aa12.1□□□□□ -0.47
TRAPPC11-201ENST00000334690 WFDC10BQ8IUB3 73 aa12.08□□□□□ -0.48
TRAPPC11-201ENST00000334690 NDUFC2-KCTD14E9PQ53 114 aa12.08□□□□□ -0.48
TRAPPC11-201ENST00000334690 KLK9Q2XQG4 91 aa12.07□□□□□ -0.48
TRAPPC11-201ENST00000334690 Q6ZTC4 211 aa12.06□□□□□ -0.48
TRAPPC11-201ENST00000334690 PPDPFQ9H3Y8 114 aa12.06□□□□□ -0.48
TRAPPC11-201ENST00000334690 SNURFQ9Y675 71 aa12.06□□□□□ -0.48
TRAPPC11-201ENST00000334690 LINC00474Q9P2X8 69 aa12.06□□□□□ -0.48
TRAPPC11-201ENST00000334690 ZNF706Q9Y5V0 76 aaPredicted RBP12.06□□□□□ -0.48
TRAPPC11-201ENST00000334690 IGHV3OR16-9A0A0B4J2B5 98 aa12.05□□□□□ -0.48
TRAPPC11-201ENST00000334690 F8WDY8 70 aa12.05□□□□□ -0.48
TRAPPC11-201ENST00000334690 LINC00337Q8N6G1 96 aa12.05□□□□□ -0.48
TRAPPC11-201ENST00000334690 TRAV7A0A075B6U4 112 aa12.04□□□□□ -0.48
TRAPPC11-201ENST00000334690 RETNQ9HD89 108 aa12.04□□□□□ -0.48
TRAPPC11-201ENST00000334690 C2orf48Q96LS8 159 aa12.04□□□□□ -0.48
TRAPPC11-201ENST00000334690 WFDC13Q8IUB5 93 aa12.03□□□□□ -0.48
TRAPPC11-201ENST00000334690 MPLKIPQ8TAP9 179 aa12.03□□□□□ -0.48
TRAPPC11-201ENST00000334690 C7orf33Q8WU49 177 aa12.03□□□□□ -0.48
TRAPPC11-201ENST00000334690 IGLV5-45A0A087WSX0 123 aa12.01□□□□□ -0.49
TRAPPC11-201ENST00000334690 A0A087WVE0 104 aa12.01□□□□□ -0.49
TRAPPC11-201ENST00000334690 C1orf137Q5JT78 98 aa12.01□□□□□ -0.49
TRAPPC11-201ENST00000334690 LYPD5Q6UWN5 251 aa12.01□□□□□ -0.49
TRAPPC11-201ENST00000334690 PCSK5Q92824 1860 aa12□□□□□ -0.49
TRAPPC11-201ENST00000334690 C6orf223Q8N319 242 aa12□□□□□ -0.49
TRAPPC11-201ENST00000334690 FHL3Q13643 280 aa11.99□□□□□ -0.49
TRAPPC11-201ENST00000334690 LINC00575Q6W349 94 aa11.99□□□□□ -0.49
TRAPPC11-201ENST00000334690 CDIP1Q9H305 208 aa11.99□□□□□ -0.49
TRAPPC11-201ENST00000334690 PLAC8L1A1L4L8 177 aa11.99□□□□□ -0.49
TRAPPC11-201ENST00000334690 V9GYY9 64 aa11.98□□□□□ -0.49
TRAPPC11-201ENST00000334690 LRCOL1A6NCL2 159 aa11.98□□□□□ -0.49
TRAPPC11-201ENST00000334690 SEC61GP60059 68 aa11.96□□□□□ -0.49
TRAPPC11-201ENST00000334690 LINC00846Q9NV44 126 aa11.96□□□□□ -0.5
TRAPPC11-201ENST00000334690 COL27A1Q8IZC6 1860 aaPredicted RBP11.95□□□□□ -0.5
TRAPPC11-201ENST00000334690 M0R2N4 97 aa11.95□□□□□ -0.5
TRAPPC11-201ENST00000334690 Q8N3U1 123 aa11.95□□□□□ -0.5
TRAPPC11-201ENST00000334690 PRO0461Q9UI25 63 aa11.95□□□□□ -0.5
TRAPPC11-201ENST00000334690 SMCPP49901 116 aaPredicted RBP11.94□□□□□ -0.5
TRAPPC11-201ENST00000334690 REG3GQ6UW15 175 aa11.94□□□□□ -0.5
TRAPPC11-201ENST00000334690 CASC2Q6XLA1 102 aa11.94□□□□□ -0.5
TRAPPC11-201ENST00000334690 MRPL55Q7Z7F7 128 aaKnown RBP11.94□□□□□ -0.5
TRAPPC11-201ENST00000334690 SPINK6Q6UWN8 80 aa11.94□□□□□ -0.5
TRAPPC11-201ENST00000334690 TRBV7-7A0A0K0K1E9 115 aa11.93□□□□□ -0.5
TRAPPC11-201ENST00000334690 SMIM26A0A096LP01 95 aa11.93□□□□□ -0.5
TRAPPC11-201ENST00000334690 C10orf25Q5T742 122 aa11.93□□□□□ -0.5
TRAPPC11-201ENST00000334690 Q9UF83 564 aa11.92□□□□□ -0.5
TRAPPC11-201ENST00000334690 CELA1Q9UNI1 258 aa11.92□□□□□ -0.5
TRAPPC11-201ENST00000334690 F8P00451 2351 aa11.92□□□□□ -0.5
TRAPPC11-201ENST00000334690 PRYO14603 147 aa11.91□□□□□ -0.5
TRAPPC11-201ENST00000334690 Q6ZRU5 148 aa11.91□□□□□ -0.5
TRAPPC11-201ENST00000334690 FLNBO75369 2602 aaKnown RBP11.9□□□□□ -0.5
TRAPPC11-201ENST00000334690 Q6ZVQ6 151 aa11.9□□□□□ -0.5
TRAPPC11-201ENST00000334690 NUPR2A6NF83 97 aa11.9□□□□□ -0.5
TRAPPC11-201ENST00000334690 IGLV9-49A0A0B4J1Y8 123 aa11.9□□□□□ -0.5
TRAPPC11-201ENST00000334690 FAM30AQ9NZY2 134 aa11.89□□□□□ -0.51
TRAPPC11-201ENST00000334690 Q8N9L7 120 aa11.89□□□□□ -0.51
TRAPPC11-201ENST00000334690 SPTSSBQ8NFR3 76 aa11.89□□□□□ -0.51
TRAPPC11-201ENST00000334690 A8MTW9 85 aa11.89□□□□□ -0.51
TRAPPC11-201ENST00000334690 PRR4Q16378 134 aa11.89□□□□□ -0.51
TRAPPC11-201ENST00000334690 FSHBP01225 129 aa11.87□□□□□ -0.51
TRAPPC11-201ENST00000334690 SOSTDC1Q6X4U4 206 aa11.87□□□□□ -0.51
TRAPPC11-201ENST00000334690 SBSPONQ8IVN8 264 aa11.87□□□□□ -0.51
TRAPPC11-201ENST00000334690 SERP1Q9Y6X1 66 aa11.86□□□□□ -0.51
TRAPPC11-201ENST00000334690 HRCT1Q6UXD1 115 aa11.86□□□□□ -0.51
TRAPPC11-201ENST00000334690 LINC01547P58512 204 aaPredicted RBP11.84□□□□□ -0.51
TRAPPC11-201ENST00000334690 LINC01556Q5JQF7 62 aa11.83□□□□□ -0.52
TRAPPC11-201ENST00000334690 X6R8D5 127 aa11.83□□□□□ -0.52
TRAPPC11-201ENST00000334690 LINC00208Q96KT6 92 aa11.83□□□□□ -0.52
TRAPPC11-201ENST00000334690 LY6G6CO95867 125 aa11.82□□□□□ -0.52
TRAPPC11-201ENST00000334690 CXCL6P80162 114 aa11.82□□□□□ -0.52
TRAPPC11-201ENST00000334690 UTRNP46939 3433 aa11.82□□□□□ -0.52
TRAPPC11-201ENST00000334690 A0A087WSZ3 146 aa11.81□□□□□ -0.52
TRAPPC11-201ENST00000334690 CHD7Q9P2D1 2997 aa11.81□□□□□ -0.52
TRAPPC11-201ENST00000334690 A0A0U1RQV1 116 aa11.81□□□□□ -0.52
TRAPPC11-201ENST00000334690 Q9BRP9 147 aa11.81□□□□□ -0.52
TRAPPC11-201ENST00000334690 H3BNG1 76 aa11.81□□□□□ -0.52
TRAPPC11-201ENST00000334690 SVIPQ8NHG7 77 aa11.8□□□□□ -0.52
TRAPPC11-201ENST00000334690 USP24Q9UPU5 2620 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms