RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 COX7B2Q8TF08 81 aa12.45□□□□□ -0.42
USP39-201ENST00000323701 DNAH7Q8WXX0 4024 aa12.45□□□□□ -0.42
USP39-201ENST00000323701 TMEM238LA0A1B0GVL6 79 aa12.45□□□□□ -0.42
USP39-201ENST00000323701 A6NJY4 79 aa12.45□□□□□ -0.42
USP39-201ENST00000323701 DNAH1Q9P2D7 4330 aa12.44□□□□□ -0.42
USP39-201ENST00000323701 A0A0U1RRA0 63 aa12.44□□□□□ -0.42
USP39-201ENST00000323701 APOMO95445 188 aa12.44□□□□□ -0.42
USP39-201ENST00000323701 TSPAN13O95857 204 aa12.44□□□□□ -0.42
USP39-201ENST00000323701 FOXI1Q12951 378 aa12.43□□□□□ -0.42
USP39-201ENST00000323701 MUSTN1Q8IVN3 82 aa12.43□□□□□ -0.42
USP39-201ENST00000323701 NPC2P61916 151 aa12.43□□□□□ -0.42
USP39-201ENST00000323701 SFTA2Q6UW10 78 aa12.43□□□□□ -0.42
USP39-201ENST00000323701 UBE2WQ96B02 151 aa12.43□□□□□ -0.42
USP39-201ENST00000323701 LINC00588Q9Y4M8 146 aa12.43□□□□□ -0.42
USP39-201ENST00000323701 PLECQ15149 4684 aaKnown RBP12.42□□□□□ -0.42
USP39-201ENST00000323701 C15orf53Q8NAA6 179 aa12.42□□□□□ -0.42
USP39-201ENST00000323701 CFC1BP0CG36 223 aa12.41□□□□□ -0.42
USP39-201ENST00000323701 CFC1P0CG37 223 aa12.41□□□□□ -0.42
USP39-201ENST00000323701 PRSS2P07478 247 aa12.4□□□□□ -0.42
USP39-201ENST00000323701 CKS1BP61024 79 aa12.4□□□□□ -0.42
USP39-201ENST00000323701 FBN3Q75N90 2809 aa12.4□□□□□ -0.42
USP39-201ENST00000323701 COX7A2LO14548 114 aa12.4□□□□□ -0.42
USP39-201ENST00000323701 A4D1N5 150 aa12.39□□□□□ -0.43
USP39-201ENST00000323701 C2orf82Q6UX34 121 aa12.39□□□□□ -0.43
USP39-201ENST00000323701 MIAQ16674 131 aa12.39□□□□□ -0.43
USP39-201ENST00000323701 SPANXDQ9BXN6 97 aa12.39□□□□□ -0.43
USP39-201ENST00000323701 SPANXCQ9NY87 97 aa12.39□□□□□ -0.43
USP39-201ENST00000323701 STARD9Q9P2P6 4700 aa12.38□□□□□ -0.43
USP39-201ENST00000323701 KIAA0087Q14695 138 aa12.38□□□□□ -0.43
USP39-201ENST00000323701 LINC01556Q5JQF7 62 aa12.38□□□□□ -0.43
USP39-201ENST00000323701 SVIPQ8NHG7 77 aa12.37□□□□□ -0.43
USP39-201ENST00000323701 LOC107984156A0A0G2JMH3 177 aa12.37□□□□□ -0.43
USP39-201ENST00000323701 TIMM17BO60830 172 aa12.37□□□□□ -0.43
USP39-201ENST00000323701 CRPP02741 224 aa12.37□□□□□ -0.43
USP39-201ENST00000323701 KRTAP26-1Q6PEX3 210 aa12.37□□□□□ -0.43
USP39-201ENST00000323701 ARL17AQ8IVW1 177 aa12.37□□□□□ -0.43
USP39-201ENST00000323701 C6orf226Q5I0X4 101 aa12.36□□□□□ -0.43
USP39-201ENST00000323701 KRTAP21-3Q3LHN1 58 aa12.36□□□□□ -0.43
USP39-201ENST00000323701 MEIG1Q5JSS6 88 aa12.36□□□□□ -0.43
USP39-201ENST00000323701 SOSTDC1Q6X4U4 206 aa12.36□□□□□ -0.43
USP39-201ENST00000323701 LINC00526Q96FQ7 95 aa12.36□□□□□ -0.43
USP39-201ENST00000323701 MALP21145 153 aa12.35□□□□□ -0.43
USP39-201ENST00000323701 PSMB2P49721 201 aa12.35□□□□□ -0.43
USP39-201ENST00000323701 SMCPP49901 116 aaPredicted RBP12.35□□□□□ -0.43
USP39-201ENST00000323701 DNAH10OSP0CZ25 163 aa12.35□□□□□ -0.43
USP39-201ENST00000323701 HERV-K104P63124 156 aa12.35□□□□□ -0.43
USP39-201ENST00000323701 Q8IZM0 81 aa12.35□□□□□ -0.43
USP39-201ENST00000323701 LINC01561Q8N1V8 128 aa12.35□□□□□ -0.43
USP39-201ENST00000323701 CDIP1Q9H305 208 aa12.33□□□□□ -0.44
USP39-201ENST00000323701 NHLRC4P0CG21 123 aaPredicted RBP12.33□□□□□ -0.44
USP39-201ENST00000323701 CCL18P55774 89 aa12.33□□□□□ -0.44
USP39-201ENST00000323701 C6orf223Q8N319 242 aa12.33□□□□□ -0.44
USP39-201ENST00000323701 PRO1854Q9UHT4 67 aa12.33□□□□□ -0.44
USP39-201ENST00000323701 CIRBPQ14011 172 aaKnown RBP12.32□□□□□ -0.44
USP39-201ENST00000323701 LINC00308Q8TCZ7 52 aa12.32□□□□□ -0.44
USP39-201ENST00000323701 TGP01266 2768 aa12.32□□□□□ -0.44
USP39-201ENST00000323701 DNAH10Q8IVF4 4471 aa12.32□□□□□ -0.44
USP39-201ENST00000323701 TRAV8-4A0A0B4J246 113 aa12.32□□□□□ -0.44
USP39-201ENST00000323701 TCL1BO95988 128 aa12.32□□□□□ -0.44
USP39-201ENST00000323701 LYRM7Q5U5X0 104 aa12.31□□□□□ -0.44
USP39-201ENST00000323701 PFN2P35080 140 aa12.3□□□□□ -0.44
USP39-201ENST00000323701 MIR7-3HGQ8N6C7 128 aa12.3□□□□□ -0.44
USP39-201ENST00000323701 APLNQ9ULZ1 77 aa12.3□□□□□ -0.44
USP39-201ENST00000323701 C10orf25Q5T742 122 aa12.29□□□□□ -0.44
USP39-201ENST00000323701 Q9HAA7 133 aa12.29□□□□□ -0.44
USP39-201ENST00000323701 KLK5Q9Y337 293 aaPredicted RBP12.29□□□□□ -0.44
USP39-201ENST00000323701 C9orf116Q5BN46 136 aaPredicted RBP12.29□□□□□ -0.44
USP39-201ENST00000323701 PPDPFLQ8WWR9 84 aa12.28□□□□□ -0.44
USP39-201ENST00000323701 IFITM1P13164 125 aa12.28□□□□□ -0.44
USP39-201ENST00000323701 LINC00158P58513 81 aa12.28□□□□□ -0.44
USP39-201ENST00000323701 SPAG11BQ08648 103 aa12.28□□□□□ -0.44
USP39-201ENST00000323701 IGKV2D-24A0A075B6R9 120 aa12.27□□□□□ -0.45
USP39-201ENST00000323701 A0A0B4J2C4 111 aa12.27□□□□□ -0.45
USP39-201ENST00000323701 IBA57-AS1B1ANH7 110 aa12.27□□□□□ -0.45
USP39-201ENST00000323701 ERG28Q9UKR5 140 aa12.27□□□□□ -0.45
USP39-201ENST00000323701 H7C2G1 150 aa12.26□□□□□ -0.45
USP39-201ENST00000323701 CFAP161Q6P656 301 aa12.26□□□□□ -0.45
USP39-201ENST00000323701 UNQ6190/PRO20217Q6UXQ8 127 aa12.26□□□□□ -0.45
USP39-201ENST00000323701 TEN1Q86WV5 123 aa12.26□□□□□ -0.45
USP39-201ENST00000323701 UPK3BQ9BT76 320 aa12.26□□□□□ -0.45
USP39-201ENST00000323701 MT-ATP8P03928 68 aa12.26□□□□□ -0.45
USP39-201ENST00000323701 C1orf43Q9BWL3 253 aa12.25□□□□□ -0.45
USP39-201ENST00000323701 TRBV20-1A0A075B6N2 111 aa12.25□□□□□ -0.45
USP39-201ENST00000323701 XGP55808 180 aa12.25□□□□□ -0.45
USP39-201ENST00000323701 HIGD2BQ4VC39 106 aa12.25□□□□□ -0.45
USP39-201ENST00000323701 C15orf56Q8N910 161 aa12.25□□□□□ -0.45
USP39-201ENST00000323701 SCGB1C2P0DMR2 95 aa12.24□□□□□ -0.45
USP39-201ENST00000323701 CARD19Q96LW7 228 aa12.24□□□□□ -0.45
USP39-201ENST00000323701 KRTAP1-5Q9BYS1 174 aa12.24□□□□□ -0.45
USP39-201ENST00000323701 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.23□□□□□ -0.45
USP39-201ENST00000323701 CASC10Q5T4H9 136 aa12.23□□□□□ -0.45
USP39-201ENST00000323701 VPS13DQ5THJ4 4388 aa12.22□□□□□ -0.45
USP39-201ENST00000323701 CXCL5P42830 114 aa12.21□□□□□ -0.45
USP39-201ENST00000323701 NTN5Q8WTR8 489 aaPredicted RBP12.2□□□□□ -0.46
USP39-201ENST00000323701 Q1RN00 199 aa12.19□□□□□ -0.46
USP39-201ENST00000323701 IGKV2-28A0A075B6P5 120 aa12.18□□□□□ -0.46
USP39-201ENST00000323701 IGKV2D-28P01615 120 aa12.18□□□□□ -0.46
USP39-201ENST00000323701 C6orf48Q9UBA6 75 aa12.18□□□□□ -0.46
USP39-201ENST00000323701 NUPR2A6NF83 97 aa12.17□□□□□ -0.46
USP39-201ENST00000323701 M0QXV9 152 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms