RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 H7C2G1 150 aa11.29□□□□□ -0.6
CCDC40-201ENST00000269318 KLK12Q9UKR0 248 aa11.29□□□□□ -0.6
CCDC40-201ENST00000269318 IBA57-AS1B1ANH7 110 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 C6orf226Q5I0X4 101 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 ENHOQ6UWT2 76 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 KIAA0087Q14695 138 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 DEFB121Q5J5C9 76 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 WFDC10BQ8IUB3 73 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 PRO0461Q9UI25 63 aa11.28□□□□□ -0.6
CCDC40-201ENST00000269318 F8W1H4 67 aa11.27□□□□□ -0.61
CCDC40-201ENST00000269318 ESRGQ1W209 222 aa11.27□□□□□ -0.61
CCDC40-201ENST00000269318 MIR7-3HGQ8N6C7 128 aa11.27□□□□□ -0.61
CCDC40-201ENST00000269318 TCL1BO95988 128 aa11.27□□□□□ -0.61
CCDC40-201ENST00000269318 PSMB2P49721 201 aa11.27□□□□□ -0.61
CCDC40-201ENST00000269318 MRAPQ8TCY5 172 aa11.27□□□□□ -0.61
CCDC40-201ENST00000269318 TRBV20-1A0A075B6N2 111 aa11.26□□□□□ -0.61
CCDC40-201ENST00000269318 TRBV30A0A0K0K1B3 111 aa11.26□□□□□ -0.61
CCDC40-201ENST00000269318 Q1RN00 199 aa11.26□□□□□ -0.61
CCDC40-201ENST00000269318 HUWE1Q7Z6Z7 4374 aaKnown RBP11.26□□□□□ -0.61
CCDC40-201ENST00000269318 GAGE12HA6NDE8 117 aa11.25□□□□□ -0.61
CCDC40-201ENST00000269318 SCGB1C2P0DMR2 95 aa11.25□□□□□ -0.61
CCDC40-201ENST00000269318 LINC00158P58513 81 aa11.25□□□□□ -0.61
CCDC40-201ENST00000269318 OCIAD2Q56VL3 154 aa11.25□□□□□ -0.61
CCDC40-201ENST00000269318 C2orf82Q6UX34 121 aa11.25□□□□□ -0.61
CCDC40-201ENST00000269318 TRIAP1O43715 76 aa11.24□□□□□ -0.61
CCDC40-201ENST00000269318 MALP21145 153 aa11.24□□□□□ -0.61
CCDC40-201ENST00000269318 RPL13AP40429 203 aaKnown RBP11.24□□□□□ -0.61
CCDC40-201ENST00000269318 MGAM2Q2M2H8 2515 aa11.24□□□□□ -0.61
CCDC40-201ENST00000269318 WFDC2Q14508 124 aa11.23□□□□□ -0.61
CCDC40-201ENST00000269318 TRAV10A0A0B4J240 114 aa11.23□□□□□ -0.61
CCDC40-201ENST00000269318 MTURNQ8N3F0 131 aa11.23□□□□□ -0.61
CCDC40-201ENST00000269318 TRAV8-4A0A0B4J246 113 aa11.22□□□□□ -0.61
CCDC40-201ENST00000269318 PFN2P35080 140 aa11.22□□□□□ -0.61
CCDC40-201ENST00000269318 CXCL5P42830 114 aa11.22□□□□□ -0.61
CCDC40-201ENST00000269318 KLK5Q9Y337 293 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-201ENST00000269318 CKS1BP61024 79 aa11.21□□□□□ -0.61
CCDC40-201ENST00000269318 UBE2WQ96B02 151 aa11.21□□□□□ -0.61
CCDC40-201ENST00000269318 CRPP02741 224 aa11.21□□□□□ -0.62
CCDC40-201ENST00000269318 CCL18P55774 89 aa11.21□□□□□ -0.62
CCDC40-201ENST00000269318 CFAP161Q6P656 301 aa11.21□□□□□ -0.62
CCDC40-201ENST00000269318 SMCPP49901 116 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-201ENST00000269318 SND1-IT1Q9HBX3 110 aa11.19□□□□□ -0.62
CCDC40-201ENST00000269318 LINC01556Q5JQF7 62 aa11.19□□□□□ -0.62
CCDC40-201ENST00000269318 IGKV2-28A0A075B6P5 120 aa11.18□□□□□ -0.62
CCDC40-201ENST00000269318 IGKV2D-28P01615 120 aa11.18□□□□□ -0.62
CCDC40-201ENST00000269318 KRTAP26-1Q6PEX3 210 aa11.18□□□□□ -0.62
CCDC40-201ENST00000269318 C15orf53Q8NAA6 179 aa11.17□□□□□ -0.62
CCDC40-201ENST00000269318 SPAG11BQ08648 103 aa11.17□□□□□ -0.62
CCDC40-201ENST00000269318 COX17Q14061 63 aa11.17□□□□□ -0.62
CCDC40-201ENST00000269318 K7ERU9 68 aa11.16□□□□□ -0.62
CCDC40-201ENST00000269318 COX6CP09669 75 aa11.16□□□□□ -0.62
CCDC40-201ENST00000269318 ATXN8Q156A1 80 aa11.16□□□□□ -0.62
CCDC40-201ENST00000269318 ETDBQ3ZM63 59 aa11.16□□□□□ -0.62
CCDC40-201ENST00000269318 C6orf223Q8N319 242 aa11.16□□□□□ -0.62
CCDC40-201ENST00000269318 LINC00337Q8N6G1 96 aa11.16□□□□□ -0.62
CCDC40-201ENST00000269318 TRAV13-2A0A0B4J235 113 aa11.15□□□□□ -0.62
CCDC40-201ENST00000269318 C10orf25Q5T742 122 aa11.14□□□□□ -0.63
CCDC40-201ENST00000269318 DNAH10OSP0CZ25 163 aa11.14□□□□□ -0.63
CCDC40-201ENST00000269318 C9orf116Q5BN46 136 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-201ENST00000269318 UNQ6190/PRO20217Q6UXQ8 127 aa11.13□□□□□ -0.63
CCDC40-201ENST00000269318 LINC00526Q96FQ7 95 aa11.13□□□□□ -0.63
CCDC40-201ENST00000269318 LINC01620Q4KN68 170 aa11.12□□□□□ -0.63
CCDC40-201ENST00000269318 LINC00588Q9Y4M8 146 aa11.12□□□□□ -0.63
CCDC40-201ENST00000269318 CLEC2BQ92478 149 aa11.12□□□□□ -0.63
CCDC40-201ENST00000269318 C9JAW5 83 aa11.11□□□□□ -0.63
CCDC40-201ENST00000269318 LST1O00453 97 aa11.11□□□□□ -0.63
CCDC40-201ENST00000269318 NTN5Q8WTR8 489 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-201ENST00000269318 DNAH9Q9NYC9 4486 aa11.11□□□□□ -0.63
CCDC40-201ENST00000269318 FBN3Q75N90 2809 aa11.11□□□□□ -0.63
CCDC40-201ENST00000269318 GVQW2A0A096LPI5 108 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-201ENST00000269318 M0QXV9 152 aa11.1□□□□□ -0.63
CCDC40-201ENST00000269318 SLC25A20O43772 301 aa11.1□□□□□ -0.63
CCDC40-201ENST00000269318 RPL28P46779 137 aaKnown RBP11.09□□□□□ -0.63
CCDC40-201ENST00000269318 LINC01600Q96MT4 127 aa11.09□□□□□ -0.63
CCDC40-201ENST00000269318 DNHD1Q96M86 4753 aa11.09□□□□□ -0.63
CCDC40-201ENST00000269318 B9D2Q9BPU9 175 aa11.08□□□□□ -0.64
CCDC40-201ENST00000269318 C1orf43Q9BWL3 253 aa11.08□□□□□ -0.64
CCDC40-201ENST00000269318 C15orf56Q8N910 161 aa11.08□□□□□ -0.64
CCDC40-201ENST00000269318 MUC7Q8TAX7 377 aa11.08□□□□□ -0.64
CCDC40-201ENST00000269318 COL7A1Q02388 2944 aa11.08□□□□□ -0.64
CCDC40-201ENST00000269318 NDUFC2O95298 119 aa11.07□□□□□ -0.64
CCDC40-201ENST00000269318 RNF151Q2KHN1 245 aa11.07□□□□□ -0.64
CCDC40-201ENST00000269318 TRBV10-2A0A0K0K1G8 114 aa11.07□□□□□ -0.64
CCDC40-201ENST00000269318 TEN1Q86WV5 123 aa11.07□□□□□ -0.64
CCDC40-201ENST00000269318 C6orf48Q9UBA6 75 aa11.07□□□□□ -0.64
CCDC40-201ENST00000269318 SMIM11BQ8TCY0 68 aa11.06□□□□□ -0.64
CCDC40-201ENST00000269318 IGKV2D-24A0A075B6R9 120 aa11.05□□□□□ -0.64
CCDC40-201ENST00000269318 HIGD2BQ4VC39 106 aa11.05□□□□□ -0.64
CCDC40-201ENST00000269318 ANKRD29Q8N6D5 301 aa11.05□□□□□ -0.64
CCDC40-201ENST00000269318 UPK3BQ9BT76 320 aa11.05□□□□□ -0.64
CCDC40-201ENST00000269318 ZNF561-AS1K7EIQ3 104 aa11.04□□□□□ -0.64
CCDC40-201ENST00000269318 Q8NDZ9 215 aa11.04□□□□□ -0.64
CCDC40-201ENST00000269318 PRR3P79522 188 aaKnown RBP11.03□□□□□ -0.64
CCDC40-201ENST00000269318 C2orf48Q96LS8 159 aa11.02□□□□□ -0.65
CCDC40-201ENST00000269318 CARD19Q96LW7 228 aa11.02□□□□□ -0.65
CCDC40-201ENST00000269318 FAM218AQ96MZ4 157 aa11.02□□□□□ -0.65
CCDC40-201ENST00000269318 Q9HAA7 133 aa11.02□□□□□ -0.65
CCDC40-201ENST00000269318 STAB2Q8WWQ8 2551 aa11.02□□□□□ -0.65
CCDC40-201ENST00000269318 DNAH1Q9P2D7 4330 aa11.02□□□□□ -0.65
CCDC40-201ENST00000269318 OR13C6PQ8NH95 151 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms