RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF625Q96I27 306 aaPredicted RBP0.91□□□□□ -2.26
CD44-239ENST00000639002 AMELYQ99218 206 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 TRGV9Q99603 122 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 PRO1933Q9H354 126 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 PRO1854Q9UHT4 67 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 V9GYV3 84 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 ACANP16112 2415 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 MYO18AQ92614 2054 aaKnown RBP0.91□□□□□ -2.26
CD44-239ENST00000639002 WDR87Q6ZQQ6 2873 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 ANKRD36BQ8N2N9 1353 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 KIF20BQ96Q89 1820 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 GOLGA3Q08378 1498 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 ARHGAP35Q9NRY4 1499 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 XIRP2A4UGR9 3374 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 CR1P17927 2039 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 FRYLO94915 3013 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 CTTNBP2Q8WZ74 1663 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 MUC5ACP98088 5654 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 LOC400499M0QZD8 3231 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 BRWD1Q9NSI6 2320 aa0.9□□□□□ -2.26
CD44-239ENST00000639002 BLMP54132 1417 aaPredicted RBP0.9□□□□□ -2.26
CD44-239ENST00000639002 WNK1Q9H4A3 2382 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 MON2Q7Z3U7 1717 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 WNK3Q9BYP7 1800 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 LRBAP50851 2863 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 LOC101927531A0A1B0GV80 90 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 HCRTO43612 131 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 CYB5AP00167 134 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 CAV3P56539 151 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 EDDM3BP56851 147 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 FXYD4P59646 89 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 ZNF56Q15929 161 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 TMEM170BQ5T4T1 132 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 UNQ6190/PRO20217Q6UXQ8 127 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 Q6ZQY7 126 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 SERP2Q8N6R1 65 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 FAM213BQ8TBF2 198 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 COX7B2Q8TF08 81 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 FAM167A-AS1Q96KT0 104 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 CYSTM1Q9H1C7 97 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 DYNLRB1Q9NP97 96 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 RABAC1Q9UI14 185 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 LENEPQ9Y5L5 61 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 R4GMQ9 66 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 V9GYH0 126 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 PXDNQ92626 1479 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 ADGRB2O60241 1585 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 ALPK2Q86TB3 2170 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 CACNA1HO95180 2353 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 TGP01266 2768 aa0.9□□□□□ -2.27
CD44-239ENST00000639002 RRBP1Q9P2E9 1410 aaKnown RBP0.89□□□□□ -2.27
CD44-239ENST00000639002 PRDM15P57071 1507 aaPredicted RBP0.89□□□□□ -2.27
CD44-239ENST00000639002 PEAK1Q9H792 1746 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 PDCD11Q14690 1871 aaKnown RBP0.89□□□□□ -2.27
CD44-239ENST00000639002 TRBV7-7A0A0K0K1E9 115 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 CHKB-CPT1BH3BT56 60 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 K7EP34 96 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 PPP1R17O96001 155 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 ANGP03950 147 aaKnown RBP0.89□□□□□ -2.27
CD44-239ENST00000639002 UQCRHP07919 91 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 CCL3L1P16619 93 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 SPAG11BQ08648 103 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 FXYD3Q14802 87 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 PMCHL1Q16048 86 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 SPAG11AQ6PDA7 123 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 Q6ZSA8 131 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 DEFB132Q7Z7B7 95 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 Q86TA4 180 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 TSLPQ969D9 159 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 S100A16Q96FQ6 103 aaKnown RBP0.89□□□□□ -2.27
CD44-239ENST00000639002 NPVFQ9HCQ7 196 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 LINC00474Q9P2X8 69 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 CACFD1Q9UGQ2 172 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.89□□□□□ -2.27
CD44-239ENST00000639002 MAP3K4Q9Y6R4 1608 aa0.89□□□□□ -2.27
CD44-239ENST00000639002 MLH3Q9UHC1 1453 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 PLIN4Q96Q06 1357 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 NCR3O14931 201 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 APOC3P02656 99 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 KLKP1Q107X0 134 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 ADIRFQ15847 76 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 ZNF720Q7Z2F6 126 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 Q8N6K4 173 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 C5orf56Q8N8D9 126 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 NXT2Q9NPJ8 142 aaKnown RBP0.88□□□□□ -2.27
CD44-239ENST00000639002 PHRF1Q9P1Y6 1649 aaKnown RBP0.88□□□□□ -2.27
CD44-239ENST00000639002 EPRSP07814 1512 aaKnown RBP0.88□□□□□ -2.27
CD44-239ENST00000639002 DIDO1Q9BTC0 2240 aaKnown RBP0.88□□□□□ -2.27
CD44-239ENST00000639002 SIPA1L3O60292 1781 aaPredicted RBP0.88□□□□□ -2.27
CD44-239ENST00000639002 MDN1Q9NU22 5596 aa0.88□□□□□ -2.27
CD44-239ENST00000639002 NIPBLQ6KC79 2804 aaeCLIP0.88□□□□□ -2.27
CD44-239ENST00000639002 UNC13BO14795 1591 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 DIP2CQ9Y2E4 1556 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 MYH4Q9Y623 1939 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 BTAF1O14981 1849 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 FANCAO15360 1455 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 ATP10BO94823 1461 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 MAGI2Q86UL8 1455 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 FRYQ5TBA9 3013 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 COL7A1Q02388 2944 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms