RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IGHV3-33P01772 117 aa13.78□□□□□ -0.2
CLIP3-206ENST00000593074 GYPEP15421 78 aa13.78□□□□□ -0.2
CLIP3-206ENST00000593074 ARL17AQ8IVW1 177 aa13.78□□□□□ -0.2
CLIP3-206ENST00000593074 C3orf56Q8N813 242 aa13.77□□□□□ -0.21
CLIP3-206ENST00000593074 PRO0255Q9UI72 69 aa13.77□□□□□ -0.21
CLIP3-206ENST00000593074 IGLV4-60A0A075B6I1 120 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 IGHV4-30-4P0DP06 118 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 SFTA2Q6UW10 78 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 CHCHD5Q9BSY4 110 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 PRSS2P07478 247 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 ATP6V0E2Q8NHE4 81 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 RNF183Q96D59 192 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 Q9H8V8 135 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 CBY1Q9Y3M2 126 aa13.76□□□□□ -0.21
CLIP3-206ENST00000593074 WFDC2Q14508 124 aa13.75□□□□□ -0.21
CLIP3-206ENST00000593074 RNF151Q2KHN1 245 aa13.75□□□□□ -0.21
CLIP3-206ENST00000593074 IGHV4-28A0A0C4DH34 117 aa13.74□□□□□ -0.21
CLIP3-206ENST00000593074 IFITM1P13164 125 aa13.74□□□□□ -0.21
CLIP3-206ENST00000593074 ZNF625Q96I27 306 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-206ENST00000593074 OXLD1Q5BKU9 147 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 SHISA2Q6UWI4 295 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 ERG28Q9UKR5 140 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 TRBV20-1A0A075B6N2 111 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 DEFB4AO15263 64 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 MIFP14174 115 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 PSMB2P49721 201 aa13.73□□□□□ -0.21
CLIP3-206ENST00000593074 G3V4G9 280 aa13.72□□□□□ -0.21
CLIP3-206ENST00000593074 Q8NAQ8 132 aa13.72□□□□□ -0.21
CLIP3-206ENST00000593074 NBEAL2Q6ZNJ1 2754 aa13.72□□□□□ -0.21
CLIP3-206ENST00000593074 CIRBPQ14011 172 aaKnown RBP13.71□□□□□ -0.21
CLIP3-206ENST00000593074 TCL1BO95988 128 aa13.71□□□□□ -0.21
CLIP3-206ENST00000593074 MTURNQ8N3F0 131 aa13.71□□□□□ -0.21
CLIP3-206ENST00000593074 TRRAPQ9Y4A5 3859 aa13.71□□□□□ -0.22
CLIP3-206ENST00000593074 TEX48A0A1B0GUV7 120 aa13.7□□□□□ -0.22
CLIP3-206ENST00000593074 PAX4O43316 350 aa13.7□□□□□ -0.22
CLIP3-206ENST00000593074 HERV-K104P63124 156 aa13.7□□□□□ -0.22
CLIP3-206ENST00000593074 NPC2P61916 151 aa13.69□□□□□ -0.22
CLIP3-206ENST00000593074 PRIMA1Q86XR5 153 aa13.69□□□□□ -0.22
CLIP3-206ENST00000593074 DAND5Q8N907 189 aa13.69□□□□□ -0.22
CLIP3-206ENST00000593074 IGHV3OR16-9A0A0B4J2B5 98 aa13.68□□□□□ -0.22
CLIP3-206ENST00000593074 DAD1P61803 113 aa13.68□□□□□ -0.22
CLIP3-206ENST00000593074 A0A1B0GUV1 79 aa13.68□□□□□ -0.22
CLIP3-206ENST00000593074 CYSRT1A8MQ03 144 aa13.68□□□□□ -0.22
CLIP3-206ENST00000593074 KRTAP10-11P60412 298 aa13.68□□□□□ -0.22
CLIP3-206ENST00000593074 IGKV3OR2-268A0A0C4DH90 116 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 H7C2G1 150 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 VPS25Q9BRG1 176 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 CELA1Q9UNI1 258 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 SCGB1C2P0DMR2 95 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 SMCPP49901 116 aaPredicted RBP13.67□□□□□ -0.22
CLIP3-206ENST00000593074 ETDBQ3ZM63 59 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 LINC00308Q8TCZ7 52 aa13.67□□□□□ -0.22
CLIP3-206ENST00000593074 Q1RN00 199 aa13.66□□□□□ -0.22
CLIP3-206ENST00000593074 SH2D6Q7Z4S9 175 aa13.66□□□□□ -0.22
CLIP3-206ENST00000593074 TRBV30A0A0K0K1B3 111 aa13.65□□□□□ -0.22
CLIP3-206ENST00000593074 LINC00959A0A1B0GUT2 108 aa13.65□□□□□ -0.22
CLIP3-206ENST00000593074 SPART-AS1P0CW21 52 aa13.65□□□□□ -0.22
CLIP3-206ENST00000593074 COX7B2Q8TF08 81 aa13.65□□□□□ -0.22
CLIP3-206ENST00000593074 A0A087WZ39 114 aa13.65□□□□□ -0.22
CLIP3-206ENST00000593074 EGFEM1PQ0D2K5 195 aa13.65□□□□□ -0.22
CLIP3-206ENST00000593074 ATP5G1P05496 136 aa13.64□□□□□ -0.23
CLIP3-206ENST00000593074 COPS9Q8WXC6 57 aa13.64□□□□□ -0.23
CLIP3-206ENST00000593074 A0A096LPF7 62 aa13.63□□□□□ -0.23
CLIP3-206ENST00000593074 PPDPFQ9H3Y8 114 aa13.63□□□□□ -0.23
CLIP3-206ENST00000593074 MEIG1Q5JSS6 88 aa13.63□□□□□ -0.23
CLIP3-206ENST00000593074 TRAV26-1A0A087WT03 109 aa13.62□□□□□ -0.23
CLIP3-206ENST00000593074 TMEM262E9PQX1 116 aa13.62□□□□□ -0.23
CLIP3-206ENST00000593074 TRIAP1O43715 76 aa13.62□□□□□ -0.23
CLIP3-206ENST00000593074 ICOSQ9Y6W8 199 aa13.62□□□□□ -0.23
CLIP3-206ENST00000593074 SOSTDC1Q6X4U4 206 aa13.61□□□□□ -0.23
CLIP3-206ENST00000593074 A0A0U1RRA0 63 aa13.6□□□□□ -0.23
CLIP3-206ENST00000593074 RPL13AP40429 203 aaKnown RBP13.59□□□□□ -0.23
CLIP3-206ENST00000593074 FBN1P35555 2871 aaKnown RBP13.59□□□□□ -0.23
CLIP3-206ENST00000593074 BAHCC1Q9P281 2608 aa13.59□□□□□ -0.23
CLIP3-206ENST00000593074 SS18Q15532 418 aa13.58□□□□□ -0.24
CLIP3-206ENST00000593074 C5orf38Q86SI9 138 aa13.58□□□□□ -0.24
CLIP3-206ENST00000593074 TOMM7Q9P0U1 55 aa13.58□□□□□ -0.24
CLIP3-206ENST00000593074 J3QR89 54 aa13.57□□□□□ -0.24
CLIP3-206ENST00000593074 ATXN8Q156A1 80 aa13.57□□□□□ -0.24
CLIP3-206ENST00000593074 M0QXV9 152 aa13.56□□□□□ -0.24
CLIP3-206ENST00000593074 HTN3P15516 51 aa13.55□□□□□ -0.24
CLIP3-206ENST00000593074 XCL1P47992 114 aa13.55□□□□□ -0.24
CLIP3-206ENST00000593074 MRPL23Q16540 153 aaKnown RBP13.55□□□□□ -0.24
CLIP3-206ENST00000593074 LINC01561Q8N1V8 128 aa13.55□□□□□ -0.24
CLIP3-206ENST00000593074 COX6CP09669 75 aa13.54□□□□□ -0.24
CLIP3-206ENST00000593074 CLPSL2Q6UWE3 100 aa13.54□□□□□ -0.24
CLIP3-206ENST00000593074 TEN1Q86WV5 123 aa13.54□□□□□ -0.24
CLIP3-206ENST00000593074 C9JAW5 83 aa13.54□□□□□ -0.24
CLIP3-206ENST00000593074 SLC25A20O43772 301 aa13.54□□□□□ -0.24
CLIP3-206ENST00000593074 STAB1Q9NY15 2570 aa13.53□□□□□ -0.24
CLIP3-206ENST00000593074 FOXI1Q12951 378 aa13.53□□□□□ -0.24
CLIP3-206ENST00000593074 LINC01620Q4KN68 170 aa13.53□□□□□ -0.24
CLIP3-206ENST00000593074 RETNQ9HD89 108 aa13.53□□□□□ -0.24
CLIP3-206ENST00000593074 IBA57-AS1B1ANH7 110 aa13.52□□□□□ -0.24
CLIP3-206ENST00000593074 LINC00269Q8N2A0 174 aa13.52□□□□□ -0.24
CLIP3-206ENST00000593074 MIR7-3HGQ8N6C7 128 aa13.52□□□□□ -0.25
CLIP3-206ENST00000593074 LINC01600Q96MT4 127 aa13.51□□□□□ -0.25
CLIP3-206ENST00000593074 LELP1Q5T871 98 aa13.51□□□□□ -0.25
CLIP3-206ENST00000593074 Q8IZM0 81 aa13.51□□□□□ -0.25
CLIP3-206ENST00000593074 Q8N3U1 123 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms