RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 IGHV3OR16-9A0A0B4J2B5 98 aa12.8□□□□□ -0.36
CLK3-225ENST00000569063 OXTP01178 125 aa12.8□□□□□ -0.36
CLK3-225ENST00000569063 HNRNPA3P51991 378 aaKnown RBP12.8□□□□□ -0.36
CLK3-225ENST00000569063 STPG4Q8N801 248 aa12.8□□□□□ -0.36
CLK3-225ENST00000569063 Q8N8P6 123 aa12.8□□□□□ -0.36
CLK3-225ENST00000569063 IFITM10A6NMD0 228 aa12.79□□□□□ -0.36
CLK3-225ENST00000569063 Q6ZRU5 148 aa12.79□□□□□ -0.36
CLK3-225ENST00000569063 C2orf48Q96LS8 159 aa12.79□□□□□ -0.36
CLK3-225ENST00000569063 SEC11CQ9BY50 192 aa12.79□□□□□ -0.36
CLK3-225ENST00000569063 TRAV9-1A0A075B6T8 112 aa12.78□□□□□ -0.36
CLK3-225ENST00000569063 OR10D4PQ8NGN7 298 aa12.78□□□□□ -0.36
CLK3-225ENST00000569063 C7orf33Q8WU49 177 aa12.78□□□□□ -0.36
CLK3-225ENST00000569063 CAMK2N2Q96S95 79 aa12.78□□□□□ -0.36
CLK3-225ENST00000569063 IGLV4-3A0A075B6K6 122 aa12.77□□□□□ -0.37
CLK3-225ENST00000569063 K7EMI3 77 aa12.77□□□□□ -0.37
CLK3-225ENST00000569063 TMEM141Q96I45 108 aa12.76□□□□□ -0.37
CLK3-225ENST00000569063 LOC107984640A0A0U1RRK4 108 aa12.75□□□□□ -0.37
CLK3-225ENST00000569063 SPAG11BQ08648 103 aa12.75□□□□□ -0.37
CLK3-225ENST00000569063 ORMDL2Q53FV1 153 aa12.75□□□□□ -0.37
CLK3-225ENST00000569063 C2orf66Q6UXQ4 117 aa12.75□□□□□ -0.37
CLK3-225ENST00000569063 COMMD7Q86VX2 200 aa12.75□□□□□ -0.37
CLK3-225ENST00000569063 NXT2Q9NPJ8 142 aaKnown RBP12.75□□□□□ -0.37
CLK3-225ENST00000569063 CYSLTR1Q9Y271 337 aa12.75□□□□□ -0.37
CLK3-225ENST00000569063 F8WDY8 70 aa12.74□□□□□ -0.37
CLK3-225ENST00000569063 PTTG1IPP53801 180 aa12.74□□□□□ -0.37
CLK3-225ENST00000569063 RNF151Q2KHN1 245 aa12.74□□□□□ -0.37
CLK3-225ENST00000569063 NPSP0C0P6 89 aa12.73□□□□□ -0.37
CLK3-225ENST00000569063 LINC00242Q5T6M2 205 aa12.73□□□□□ -0.37
CLK3-225ENST00000569063 TEX43Q6ZNM6 134 aa12.73□□□□□ -0.37
CLK3-225ENST00000569063 ORAOV1Q8WV07 137 aa12.73□□□□□ -0.37
CLK3-225ENST00000569063 PKHD1L1Q86WI1 4243 aa12.73□□□□□ -0.37
CLK3-225ENST00000569063 LRP1Q07954 4544 aaKnown RBP12.73□□□□□ -0.37
CLK3-225ENST00000569063 TGIF2-C20orf24A0A0A6YYL0 155 aa12.72□□□□□ -0.37
CLK3-225ENST00000569063 C10orf91Q5T1B1 145 aa12.72□□□□□ -0.37
CLK3-225ENST00000569063 A0A087WZ39 114 aa12.71□□□□□ -0.37
CLK3-225ENST00000569063 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.71□□□□□ -0.37
CLK3-225ENST00000569063 S100PP25815 95 aa12.71□□□□□ -0.37
CLK3-225ENST00000569063 GAGE2BQ13066 116 aa12.71□□□□□ -0.37
CLK3-225ENST00000569063 KIAA1644Q3SXP7 199 aa12.71□□□□□ -0.37
CLK3-225ENST00000569063 IGIPA6NJ69 53 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 G0S2P27469 103 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 UBE2D1P51668 147 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 Q6ZN92 141 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 AMELXQ99217 191 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 C2orf88Q9BSF0 95 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 GNB1LQ9BYB4 327 aa12.7□□□□□ -0.38
CLK3-225ENST00000569063 MRPL35Q9NZE8 188 aaKnown RBP12.7□□□□□ -0.38
CLK3-225ENST00000569063 LINC00173Q6ZV60 143 aa12.69□□□□□ -0.38
CLK3-225ENST00000569063 VCX2Q9H322 139 aa12.69□□□□□ -0.38
CLK3-225ENST00000569063 FAT3Q8TDW7 4589 aa12.68□□□□□ -0.38
CLK3-225ENST00000569063 PRR3P79522 188 aaKnown RBP12.68□□□□□ -0.38
CLK3-225ENST00000569063 CARHSP1Q9Y2V2 147 aaKnown RBP12.68□□□□□ -0.38
CLK3-225ENST00000569063 A0A0J9YXV3 536 aa12.67□□□□□ -0.38
CLK3-225ENST00000569063 NDUFA1O15239 70 aa12.67□□□□□ -0.38
CLK3-225ENST00000569063 ZC2HC1BQ5TFG8 222 aa12.67□□□□□ -0.38
CLK3-225ENST00000569063 LINC01561Q8N1V8 128 aa12.67□□□□□ -0.38
CLK3-225ENST00000569063 RPL18AQ02543 176 aaKnown RBP12.66□□□□□ -0.38
CLK3-225ENST00000569063 KIAA0087Q14695 138 aa12.66□□□□□ -0.38
CLK3-225ENST00000569063 RHEBQ15382 184 aa12.66□□□□□ -0.38
CLK3-225ENST00000569063 COX19Q49B96 90 aa12.66□□□□□ -0.38
CLK3-225ENST00000569063 PAPPA-AS1Q5QFB9 102 aa12.65□□□□□ -0.38
CLK3-225ENST00000569063 C10orf25Q5T742 122 aa12.65□□□□□ -0.38
CLK3-225ENST00000569063 FAM19A3Q7Z5A8 133 aa12.65□□□□□ -0.38
CLK3-225ENST00000569063 TOMM6Q96B49 74 aa12.65□□□□□ -0.38
CLK3-225ENST00000569063 TIMM17AQ99595 171 aa12.65□□□□□ -0.38
CLK3-225ENST00000569063 ALKBH7Q9BT30 221 aaPredicted RBP12.65□□□□□ -0.38
CLK3-225ENST00000569063 A0A1W2PNN7 141 aa12.64□□□□□ -0.39
CLK3-225ENST00000569063 UNQ6190/PRO20217Q6UXQ8 127 aa12.64□□□□□ -0.39
CLK3-225ENST00000569063 LINC01546A6NGU7 62 aa12.63□□□□□ -0.39
CLK3-225ENST00000569063 TLX1NBP0CAT3 122 aa12.63□□□□□ -0.39
CLK3-225ENST00000569063 RPS10P5Q9NQ39 176 aa12.63□□□□□ -0.39
CLK3-225ENST00000569063 C6orf48Q9UBA6 75 aa12.63□□□□□ -0.39
CLK3-225ENST00000569063 MT-ND6P03923 174 aa12.62□□□□□ -0.39
CLK3-225ENST00000569063 C9orf116Q5BN46 136 aaPredicted RBP12.62□□□□□ -0.39
CLK3-225ENST00000569063 Q6ZRP5 223 aa12.61□□□□□ -0.39
CLK3-225ENST00000569063 ERASQ7Z444 233 aa12.61□□□□□ -0.39
CLK3-225ENST00000569063 SEC11AP67812 179 aa12.6□□□□□ -0.39
CLK3-225ENST00000569063 SERTAD4-AS1Q5TG53 156 aa12.6□□□□□ -0.39
CLK3-225ENST00000569063 MRPL18Q9H0U6 180 aaKnown RBP12.6□□□□□ -0.39
CLK3-225ENST00000569063 TRBV30A0A0K0K1B3 111 aa12.59□□□□□ -0.39
CLK3-225ENST00000569063 LINC01549A6NIU2 74 aa12.59□□□□□ -0.39
CLK3-225ENST00000569063 MT1HL1P0DM35 61 aa12.59□□□□□ -0.39
CLK3-225ENST00000569063 HERVK_113P63121 156 aa12.59□□□□□ -0.39
CLK3-225ENST00000569063 SCGB3A1Q96QR1 104 aa12.59□□□□□ -0.39
CLK3-225ENST00000569063 FABP9Q0Z7S8 132 aa12.58□□□□□ -0.4
CLK3-225ENST00000569063 C2orf82Q6UX34 121 aa12.58□□□□□ -0.4
CLK3-225ENST00000569063 SPINK6Q6UWN8 80 aa12.57□□□□□ -0.4
CLK3-225ENST00000569063 GEMIN7Q9H840 131 aaKnown RBP12.56□□□□□ -0.4
CLK3-225ENST00000569063 CDKN2A-AS1Q9UH64 79 aa12.56□□□□□ -0.4
CLK3-225ENST00000569063 PRSS2P07478 247 aa12.55□□□□□ -0.4
CLK3-225ENST00000569063 SRSF9Q13242 221 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-225ENST00000569063 Q8IZM0 81 aa12.55□□□□□ -0.4
CLK3-225ENST00000569063 PACRGQ96M98 296 aaPredicted RBP12.55□□□□□ -0.4
CLK3-225ENST00000569063 FA2HQ7L5A8 372 aa12.54□□□□□ -0.4
CLK3-225ENST00000569063 PHF5AQ7RTV0 110 aaKnown RBP12.54□□□□□ -0.4
CLK3-225ENST00000569063 NDUFC2-KCTD14E9PQ53 114 aa12.53□□□□□ -0.4
CLK3-225ENST00000569063 APOC3P02656 99 aa12.53□□□□□ -0.4
CLK3-225ENST00000569063 GAGE2EQ4V326 116 aa12.53□□□□□ -0.4
CLK3-225ENST00000569063 C6orf226Q5I0X4 101 aa12.53□□□□□ -0.4
CLK3-225ENST00000569063 SMCO4Q9NRQ5 59 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms