RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RYR3Q15413 4870 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 CSMD3Q7Z407 3707 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 STARD9Q9P2P6 4700 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 DEFB131BA0A096LNP1 70 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 IGHV1-58A0A0C4DH39 117 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 ZNF815PA8K554 130 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 TAL2Q16559 108 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 MPV17L2Q567V2 206 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 LINC00242Q5T6M2 205 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 SCGB1D4Q6XE38 83 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 Q6ZTC4 211 aa6.17□□□□□ -1.42
VPS39-207ENST00000563692 IGLV5-45A0A087WSX0 123 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 TRAV10A0A0B4J240 114 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 IGLL5B9A064 214 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 RBX1P62877 108 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 SS18Q15532 418 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 LYPD5Q6UWN5 251 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 TTTY13Q9BZ97 58 aa6.16□□□□□ -1.42
VPS39-207ENST00000563692 IGLV4-60A0A075B6I1 120 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 EREGO14944 169 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 IGHV3-30-3P0DP02 117 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 COX6A2Q02221 97 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 BVES-AS1Q5T3Y7 98 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 HIST1H4GQ99525 98 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 CDKN2A-AS1Q9UH64 79 aa6.15□□□□□ -1.42
VPS39-207ENST00000563692 DYNC2H1Q8NCM8 4307 aaKnown RBP6.14□□□□□ -1.43
VPS39-207ENST00000563692 IGHV3-64A0A075B6Q5 118 aa6.14□□□□□ -1.43
VPS39-207ENST00000563692 IGKV3OR2-268A0A0C4DH90 116 aa6.14□□□□□ -1.43
VPS39-207ENST00000563692 A6NDN8 102 aa6.14□□□□□ -1.43
VPS39-207ENST00000563692 SPINK8P0C7L1 97 aa6.14□□□□□ -1.43
VPS39-207ENST00000563692 ORAOV1Q8WV07 137 aa6.14□□□□□ -1.43
VPS39-207ENST00000563692 TP73-AS1Q9UF72 201 aa6.14□□□□□ -1.43
VPS39-207ENST00000563692 LINC00959A0A1B0GUT2 108 aa6.13□□□□□ -1.43
VPS39-207ENST00000563692 ANGP03950 147 aaKnown RBP6.13□□□□□ -1.43
VPS39-207ENST00000563692 PTTG1IPP53801 180 aa6.13□□□□□ -1.43
VPS39-207ENST00000563692 SRSF9Q13242 221 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS39-207ENST00000563692 C15orf53Q8NAA6 179 aa6.13□□□□□ -1.43
VPS39-207ENST00000563692 LYSTQ99698 3801 aa6.13□□□□□ -1.43
VPS39-207ENST00000563692 TRAV8-3A0A0A6YYJ7 113 aa6.12□□□□□ -1.43
VPS39-207ENST00000563692 GCSHP23434 173 aa6.12□□□□□ -1.43
VPS39-207ENST00000563692 CIRBPQ14011 172 aaKnown RBP6.12□□□□□ -1.43
VPS39-207ENST00000563692 CEND1Q8N111 149 aa6.12□□□□□ -1.43
VPS39-207ENST00000563692 LINC00269Q8N2A0 174 aa6.12□□□□□ -1.43
VPS39-207ENST00000563692 TM2D2Q9BX73 214 aa6.12□□□□□ -1.43
VPS39-207ENST00000563692 NDUFA12Q9UI09 145 aa6.12□□□□□ -1.43
VPS39-207ENST00000563692 IGLV5-39A0A0G2JS06 123 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 TMEM238C9JI98 176 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 SMIM13P0DJ93 91 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 TSPEAR-AS2P59090 65 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 REG3AQ06141 175 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 LINC01561Q8N1V8 128 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 SPANXB1Q9NS25 103 aaPredicted RBP6.11□□□□□ -1.43
VPS39-207ENST00000563692 SACSQ9NZJ4 4579 aa6.11□□□□□ -1.43
VPS39-207ENST00000563692 RYR2Q92736 4967 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 A0A087WZ39 114 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 IGHV3OR16-9A0A0B4J2B5 98 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 TMEM238LA0A1B0GVL6 79 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 A6NJY4 79 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 SMIM1B2RUZ4 78 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 ESRGQ1W209 222 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 SFTA2Q6UW10 78 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 Q6ZVH6 145 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 APLNQ9ULZ1 77 aa6.1□□□□□ -1.43
VPS39-207ENST00000563692 TRAV8-4A0A0B4J246 113 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 A0A0J9YXY3 114 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 NDUFA1O15239 70 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 TIMM17BO60830 172 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 CRPP02741 224 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 XCL1P47992 114 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 HERV-K104P63124 156 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 CD164L2Q6UWJ8 174 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 COX7B2Q8TF08 81 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 COPS9Q8WXC6 57 aa6.09□□□□□ -1.43
VPS39-207ENST00000563692 A0A1B0GV90 55 aa6.08□□□□□ -1.44
VPS39-207ENST00000563692 PRSS2P07478 247 aa6.08□□□□□ -1.44
VPS39-207ENST00000563692 CCL18P55774 89 aa6.08□□□□□ -1.44
VPS39-207ENST00000563692 C5orf38Q86SI9 138 aa6.08□□□□□ -1.44
VPS39-207ENST00000563692 KLK12Q9UKR0 248 aa6.08□□□□□ -1.44
VPS39-207ENST00000563692 ALMS1Q8TCU4 4167 aa6.08□□□□□ -1.44
VPS39-207ENST00000563692 DNAH1Q9P2D7 4330 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 COX7A2LO14548 114 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 APOMO95445 188 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 IGHV3-30P01768 117 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 IGHV3-33P01772 117 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 IGHV3-30-5P0DP03 117 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 MALP21145 153 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 RPL24P83731 157 aaKnown RBP6.07□□□□□ -1.44
VPS39-207ENST00000563692 C6orf226Q5I0X4 101 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 CLPSL2Q6UWE3 100 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 UBE2DNLQ8IWF7 75 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 C10orf126Q8N4M7 172 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 CHCHD10Q8WYQ3 142 aaPredicted RBP6.07□□□□□ -1.44
VPS39-207ENST00000563692 Q9H8V8 135 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 PRR34Q9NV39 138 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 TOMM7Q9P0U1 55 aa6.07□□□□□ -1.44
VPS39-207ENST00000563692 IFITM1P13164 125 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 FXYD2P54710 66 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 MIAQ16674 131 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 LINC01556Q5JQF7 62 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 UBE2WQ96B02 151 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms