RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LINC01560Q8TB33 94 aa9.76□□□□□ -0.85
SHMT2-226ENST00000556825 Q6ZVQ6 151 aa9.76□□□□□ -0.85
SHMT2-226ENST00000556825 PSPHP1O15172 72 aa9.75□□□□□ -0.85
SHMT2-226ENST00000556825 UBE2BP63146 152 aa9.75□□□□□ -0.85
SHMT2-226ENST00000556825 KLK9Q9UKQ9 250 aa9.75□□□□□ -0.85
SHMT2-226ENST00000556825 ACACAQ13085 2346 aa9.75□□□□□ -0.85
SHMT2-226ENST00000556825 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-226ENST00000556825 NDUFS5O43920 106 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 APC2O95996 2303 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 DGAT2L7PQ6IED9 249 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 Q6ZQT0 140 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 FAM215AQ9Y5M1 114 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 TRAV22A0A0B4J277 110 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 LINC00242Q5T6M2 205 aa9.74□□□□□ -0.85
SHMT2-226ENST00000556825 CCL17Q92583 94 aa9.73□□□□□ -0.85
SHMT2-226ENST00000556825 BPY2O14599 106 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 FAM19A3Q7Z5A8 133 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 MGAQ8IWI9 3026 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 LOC110117498A0A087WWA1 95 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 TRBV10-1A0A0K0K1A3 114 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 SYCNQ0VAF6 134 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 KLK9Q2XQG4 91 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 LINC00467Q9BRT7 94 aa9.72□□□□□ -0.85
SHMT2-226ENST00000556825 MAP1BP46821 2468 aaKnown RBP9.72□□□□□ -0.85
SHMT2-226ENST00000556825 LRCOL1A6NCL2 159 aa9.71□□□□□ -0.85
SHMT2-226ENST00000556825 K7EQG2 157 aa9.71□□□□□ -0.85
SHMT2-226ENST00000556825 C19orf54Q5BKX5 351 aa9.71□□□□□ -0.85
SHMT2-226ENST00000556825 Q8N814 137 aa9.71□□□□□ -0.85
SHMT2-226ENST00000556825 ZFHX3Q15911 3703 aa9.71□□□□□ -0.85
SHMT2-226ENST00000556825 C22orf34Q6ZV56 151 aa9.71□□□□□ -0.86
SHMT2-226ENST00000556825 Q8NA96 180 aa9.71□□□□□ -0.86
SHMT2-226ENST00000556825 RP1L1Q8IWN7 2480 aaPredicted RBP9.7□□□□□ -0.86
SHMT2-226ENST00000556825 IGHV3OR16-12A0A075B7B8 117 aa9.7□□□□□ -0.86
SHMT2-226ENST00000556825 DPM3Q9P2X0 92 aa9.7□□□□□ -0.86
SHMT2-226ENST00000556825 ANKRD11Q6UB99 2663 aaPredicted RBP9.7□□□□□ -0.86
SHMT2-226ENST00000556825 H3BS24 57 aa9.7□□□□□ -0.86
SHMT2-226ENST00000556825 EPG5Q9HCE0 2579 aa9.7□□□□□ -0.86
SHMT2-226ENST00000556825 LY6G6DO95868 133 aa9.69□□□□□ -0.86
SHMT2-226ENST00000556825 CCL18P55774 89 aa9.69□□□□□ -0.86
SHMT2-226ENST00000556825 BAHCC1Q9P281 2608 aa9.68□□□□□ -0.86
SHMT2-226ENST00000556825 ICE1Q9Y2F5 2266 aa9.68□□□□□ -0.86
SHMT2-226ENST00000556825 IGHV7-81A0A0B4J1V7 117 aa9.68□□□□□ -0.86
SHMT2-226ENST00000556825 GNLYP22749 145 aa9.68□□□□□ -0.86
SHMT2-226ENST00000556825 GRNP28799 593 aaKnown RBP9.68□□□□□ -0.86
SHMT2-226ENST00000556825 PHF5AQ7RTV0 110 aaKnown RBP9.68□□□□□ -0.86
SHMT2-226ENST00000556825 C1orf64Q8NEQ6 169 aa9.68□□□□□ -0.86
SHMT2-226ENST00000556825 A8MU10 97 aa9.67□□□□□ -0.86
SHMT2-226ENST00000556825 C8orf87E5RJ46 101 aa9.67□□□□□ -0.86
SHMT2-226ENST00000556825 LINC01356Q8N9X3 169 aa9.67□□□□□ -0.86
SHMT2-226ENST00000556825 PTPRQQ9UMZ3 2332 aa9.67□□□□□ -0.86
SHMT2-226ENST00000556825 SMG1Q96Q15 3661 aaKnown RBP9.66□□□□□ -0.86
SHMT2-226ENST00000556825 M0R2N4 97 aa9.66□□□□□ -0.86
SHMT2-226ENST00000556825 ZNF73O43830 326 aaPredicted RBP9.66□□□□□ -0.86
SHMT2-226ENST00000556825 ZNF843Q8N446 348 aa9.66□□□□□ -0.86
SHMT2-226ENST00000556825 OCR1Q9BZK8 76 aa9.66□□□□□ -0.86
SHMT2-226ENST00000556825 PCNX1Q96RV3 2341 aa9.66□□□□□ -0.86
SHMT2-226ENST00000556825 HIGD2AQ9BW72 106 aa9.66□□□□□ -0.86
SHMT2-226ENST00000556825 TPRP12270 2363 aaKnown RBP9.65□□□□□ -0.86
SHMT2-226ENST00000556825 PKD1L2Q7Z442 2459 aa9.65□□□□□ -0.86
SHMT2-226ENST00000556825 K7EMT4 169 aa9.65□□□□□ -0.86
SHMT2-226ENST00000556825 PIEZO2Q9H5I5 2752 aa9.65□□□□□ -0.87
SHMT2-226ENST00000556825 ACACBO00763 2458 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 LINC00158P58513 81 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 DMXL2Q8TDJ6 3036 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 TRBV6-4A0A1B0GX49 114 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 A8MUN3 132 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 UBE2L6O14933 153 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 PROK1P58294 105 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 LINC00269Q8N2A0 174 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 BSNQ9UPA5 3926 aa9.64□□□□□ -0.87
SHMT2-226ENST00000556825 IGHV3-73A0A0B4J1V6 119 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 NTM-AS1Q6ZSK4 140 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 NCOR2Q9Y618 2525 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 ODF3BA8MYP8 253 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 RNASE1P07998 156 aaKnown RBP9.63□□□□□ -0.87
SHMT2-226ENST00000556825 UBE2AP49459 152 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 ECSCRQ19T08 205 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 DCHS1Q96JQ0 3298 aa9.63□□□□□ -0.87
SHMT2-226ENST00000556825 ZZEF1O43149 2961 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 CEP295Q9C0D2 2601 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 PDE6GP18545 87 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 CD164L2Q6UWJ8 174 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 C16orf90A8MZG2 172 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 MINOS1Q5TGZ0 78 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 Q5VV11 94 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 ATP11AUNQ6ZP68 121 aa9.62□□□□□ -0.87
SHMT2-226ENST00000556825 ATMQ13315 3056 aa9.61□□□□□ -0.87
SHMT2-226ENST00000556825 A0A096LNT2 108 aa9.6□□□□□ -0.87
SHMT2-226ENST00000556825 C9orf66Q5T8R8 295 aa9.6□□□□□ -0.87
SHMT2-226ENST00000556825 SCXQ7RTU7 201 aa9.6□□□□□ -0.87
SHMT2-226ENST00000556825 A6NN06 94 aa9.6□□□□□ -0.87
SHMT2-226ENST00000556825 COX7B2Q8TF08 81 aa9.6□□□□□ -0.87
SHMT2-226ENST00000556825 PSCAO43653 123 aa9.59□□□□□ -0.87
SHMT2-226ENST00000556825 CHD8Q9HCK8 2581 aa9.59□□□□□ -0.87
SHMT2-226ENST00000556825 ATRXP46100 2492 aa9.59□□□□□ -0.88
SHMT2-226ENST00000556825 C11orf44Q8N8P7 122 aa9.58□□□□□ -0.88
SHMT2-226ENST00000556825 Q8N9W7 124 aa9.58□□□□□ -0.88
SHMT2-226ENST00000556825 K7EQD1 137 aa9.58□□□□□ -0.88
SHMT2-226ENST00000556825 FAM208BQ5VWN6 2430 aa9.57□□□□□ -0.88
SHMT2-226ENST00000556825 ATP6V0E1O15342 81 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms