RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FAM110AQ9BQ89 295 aa12.42□□□□□ -0.42
SYNE3-202ENST00000553340 CSMD2Q7Z408 3487 aa12.42□□□□□ -0.42
SYNE3-202ENST00000553340 TOMM7Q9P0U1 55 aa12.41□□□□□ -0.42
SYNE3-202ENST00000553340 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
SYNE3-202ENST00000553340 DNAL4O96015 105 aa12.41□□□□□ -0.42
SYNE3-202ENST00000553340 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
SYNE3-202ENST00000553340 CXCL5P42830 114 aa12.41□□□□□ -0.42
SYNE3-202ENST00000553340 ATP5G1P05496 136 aa12.4□□□□□ -0.43
SYNE3-202ENST00000553340 LINC00158P58513 81 aa12.4□□□□□ -0.43
SYNE3-202ENST00000553340 MYO9AB2RTY4 2548 aa12.39□□□□□ -0.43
SYNE3-202ENST00000553340 TRGV2A0A075B6R0 118 aa12.39□□□□□ -0.43
SYNE3-202ENST00000553340 CR1P17927 2039 aa12.38□□□□□ -0.43
SYNE3-202ENST00000553340 C5orf38Q86SI9 138 aa12.38□□□□□ -0.43
SYNE3-202ENST00000553340 C3orf56Q8N813 242 aa12.38□□□□□ -0.43
SYNE3-202ENST00000553340 SMIM11BQ8TCY0 68 aa12.38□□□□□ -0.43
SYNE3-202ENST00000553340 UTP20O75691 2785 aaKnown RBP12.38□□□□□ -0.43
SYNE3-202ENST00000553340 IGKV3OR2-268A0A0C4DH90 116 aa12.38□□□□□ -0.43
SYNE3-202ENST00000553340 LOC100131303A0A0U1RQF7 123 aa12.37□□□□□ -0.43
SYNE3-202ENST00000553340 TRBV6-4A0A1B0GX49 114 aa12.37□□□□□ -0.43
SYNE3-202ENST00000553340 POLQO75417 2590 aa12.37□□□□□ -0.43
SYNE3-202ENST00000553340 H0YGX0 51 aa12.37□□□□□ -0.43
SYNE3-202ENST00000553340 C3orf22Q8N5N4 141 aa12.37□□□□□ -0.43
SYNE3-202ENST00000553340 C16orf74Q96GX8 76 aa12.37□□□□□ -0.43
SYNE3-202ENST00000553340 A0A087WYN8 130 aa12.36□□□□□ -0.43
SYNE3-202ENST00000553340 A0A1W2PRX2 142 aa12.36□□□□□ -0.43
SYNE3-202ENST00000553340 CCL18P55774 89 aa12.36□□□□□ -0.43
SYNE3-202ENST00000553340 C9orf153Q5TBE3 101 aa12.36□□□□□ -0.43
SYNE3-202ENST00000553340 C2CD3Q4AC94 2353 aa12.35□□□□□ -0.43
SYNE3-202ENST00000553340 UQCRQO14949 82 aa12.35□□□□□ -0.43
SYNE3-202ENST00000553340 IBA57-AS1B1ANH7 110 aa12.35□□□□□ -0.43
SYNE3-202ENST00000553340 CCL24O00175 119 aa12.35□□□□□ -0.43
SYNE3-202ENST00000553340 IGHV3OR16-9A0A0B4J2B5 98 aa12.34□□□□□ -0.43
SYNE3-202ENST00000553340 TRGV4A0A0C4DH28 118 aa12.34□□□□□ -0.43
SYNE3-202ENST00000553340 PLAC8L1A1L4L8 177 aa12.34□□□□□ -0.43
SYNE3-202ENST00000553340 C11orf44Q8N8P7 122 aa12.34□□□□□ -0.43
SYNE3-202ENST00000553340 IGLV4-60A0A075B6I1 120 aa12.33□□□□□ -0.44
SYNE3-202ENST00000553340 WNK1Q9H4A3 2382 aa12.33□□□□□ -0.44
SYNE3-202ENST00000553340 GIG44P09565 113 aaPredicted RBP12.33□□□□□ -0.44
SYNE3-202ENST00000553340 CACNA1AO00555 2505 aa12.32□□□□□ -0.44
SYNE3-202ENST00000553340 TRBV6-8A0A0A6YYG3 113 aa12.32□□□□□ -0.44
SYNE3-202ENST00000553340 CMC4P56277 68 aaPredicted RBP12.32□□□□□ -0.44
SYNE3-202ENST00000553340 TMEM86BQ8N661 226 aa12.32□□□□□ -0.44
SYNE3-202ENST00000553340 CHD6Q8TD26 2715 aa12.32□□□□□ -0.44
SYNE3-202ENST00000553340 ACACBO00763 2458 aa12.32□□□□□ -0.44
SYNE3-202ENST00000553340 A0A087WZ39 114 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 PFN2P35080 140 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 LINC00526Q96FQ7 95 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 C14orf132Q9NPU4 83 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 MYO18BQ8IUG5 2567 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 NOTCH3Q9UM47 2321 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 FBN2P35556 2912 aa12.31□□□□□ -0.44
SYNE3-202ENST00000553340 PAX4O43316 350 aa12.3□□□□□ -0.44
SYNE3-202ENST00000553340 LRRC75A-AS1Q8N1F1 130 aa12.3□□□□□ -0.44
SYNE3-202ENST00000553340 TEX15Q9BXT5 2789 aa12.3□□□□□ -0.44
SYNE3-202ENST00000553340 LECT2O14960 151 aa12.3□□□□□ -0.44
SYNE3-202ENST00000553340 C9orf129Q5T035 196 aaKnown RBP12.3□□□□□ -0.44
SYNE3-202ENST00000553340 OR13C6PQ8NH95 151 aa12.29□□□□□ -0.44
SYNE3-202ENST00000553340 OBSCN-AS1Q96MR7 158 aa12.29□□□□□ -0.44
SYNE3-202ENST00000553340 RPL35AP18077 110 aaKnown RBP12.28□□□□□ -0.44
SYNE3-202ENST00000553340 DEFB113Q30KQ7 82 aa12.28□□□□□ -0.44
SYNE3-202ENST00000553340 KLK5Q9Y337 293 aaPredicted RBP12.28□□□□□ -0.44
SYNE3-202ENST00000553340 COX7CP15954 63 aa12.28□□□□□ -0.44
SYNE3-202ENST00000553340 IGSF10Q6WRI0 2623 aa12.27□□□□□ -0.44
SYNE3-202ENST00000553340 ATOX1O00244 68 aa12.27□□□□□ -0.44
SYNE3-202ENST00000553340 KRTAP10-9P60411 292 aa12.27□□□□□ -0.44
SYNE3-202ENST00000553340 HIST1H4AP62805 103 aaKnown RBP12.27□□□□□ -0.44
SYNE3-202ENST00000553340 FHL2Q14192 279 aa12.27□□□□□ -0.44
SYNE3-202ENST00000553340 WFDC10AQ9H1F0 79 aa12.27□□□□□ -0.45
SYNE3-202ENST00000553340 C6orf226Q5I0X4 101 aa12.26□□□□□ -0.45
SYNE3-202ENST00000553340 FAM208BQ5VWN6 2430 aa12.26□□□□□ -0.45
SYNE3-202ENST00000553340 DNAJC9-AS1A6NH13 148 aa12.25□□□□□ -0.45
SYNE3-202ENST00000553340 LINC00959A0A1B0GUT2 108 aa12.25□□□□□ -0.45
SYNE3-202ENST00000553340 PLA2G2AP14555 144 aa12.25□□□□□ -0.45
SYNE3-202ENST00000553340 LINC00846Q9NV44 126 aa12.25□□□□□ -0.45
SYNE3-202ENST00000553340 CENPEQ02224 2701 aa12.25□□□□□ -0.45
SYNE3-202ENST00000553340 Q6JHZ5 121 aa12.24□□□□□ -0.45
SYNE3-202ENST00000553340 CSNK1G2-AS1Q8NCQ2 148 aa12.24□□□□□ -0.45
SYNE3-202ENST00000553340 C2orf48Q96LS8 159 aa12.24□□□□□ -0.45
SYNE3-202ENST00000553340 PTPN13Q12923 2485 aa12.24□□□□□ -0.45
SYNE3-202ENST00000553340 NAV2Q8IVL1 2488 aa12.24□□□□□ -0.45
SYNE3-202ENST00000553340 LY6G6DO95868 133 aa12.24□□□□□ -0.45
SYNE3-202ENST00000553340 NCR3O14931 201 aa12.23□□□□□ -0.45
SYNE3-202ENST00000553340 C11orf68Q9H3H3 251 aaKnown RBP12.23□□□□□ -0.45
SYNE3-202ENST00000553340 ORMDL1Q9P0S3 153 aa12.23□□□□□ -0.45
SYNE3-202ENST00000553340 SLPIP03973 132 aa12.23□□□□□ -0.45
SYNE3-202ENST00000553340 IGKV3D-7A0A0C4DH55 119 aa12.22□□□□□ -0.45
SYNE3-202ENST00000553340 RPL18AQ02543 176 aaKnown RBP12.22□□□□□ -0.45
SYNE3-202ENST00000553340 C19orf73Q9NVV2 129 aa12.22□□□□□ -0.45
SYNE3-202ENST00000553340 TLN2Q9Y4G6 2542 aa12.21□□□□□ -0.45
SYNE3-202ENST00000553340 EPG5Q9HCE0 2579 aa12.21□□□□□ -0.45
SYNE3-202ENST00000553340 CRYGAP11844 174 aa12.21□□□□□ -0.45
SYNE3-202ENST00000553340 XCL1P47992 114 aa12.2□□□□□ -0.46
SYNE3-202ENST00000553340 IGLV1-51P01701 117 aa12.2□□□□□ -0.46
SYNE3-202ENST00000553340 SS18Q15532 418 aa12.2□□□□□ -0.46
SYNE3-202ENST00000553340 JMJD1CQ15652 2540 aa12.19□□□□□ -0.46
SYNE3-202ENST00000553340 Q8IZM0 81 aa12.19□□□□□ -0.46
SYNE3-202ENST00000553340 AKAP9Q99996 3911 aa12.18□□□□□ -0.46
SYNE3-202ENST00000553340 ESM1Q9NQ30 184 aa12.18□□□□□ -0.46
SYNE3-202ENST00000553340 LRRK2Q5S007 2527 aa12.17□□□□□ -0.46
SYNE3-202ENST00000553340 A0A1B0GX51 115 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms