RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 BRI3O95415 125 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 A0A0B4J2C4 111 aa11.81□□□□□ -0.52
CUX1-213ENST00000549414 C1orf158Q8N1D5 194 aa11.81□□□□□ -0.52
CUX1-213ENST00000549414 LINC00308Q8TCZ7 52 aa11.81□□□□□ -0.52
CUX1-213ENST00000549414 LINC00526Q96FQ7 95 aa11.8□□□□□ -0.52
CUX1-213ENST00000549414 UBL5Q9BZL1 73 aa11.8□□□□□ -0.52
CUX1-213ENST00000549414 TRIAP1O43715 76 aa11.8□□□□□ -0.52
CUX1-213ENST00000549414 Q6ZSN1 163 aa11.8□□□□□ -0.52
CUX1-213ENST00000549414 SPANXB1Q9NS25 103 aaPredicted RBP11.8□□□□□ -0.52
CUX1-213ENST00000549414 RBX1P62877 108 aa11.8□□□□□ -0.52
CUX1-213ENST00000549414 CHCHD10Q8WYQ3 142 aaPredicted RBP11.8□□□□□ -0.52
CUX1-213ENST00000549414 KLK5Q9Y337 293 aaPredicted RBP11.8□□□□□ -0.52
CUX1-213ENST00000549414 H0YGX0 51 aa11.8□□□□□ -0.52
CUX1-213ENST00000549414 TSPEAR-AS2P59090 65 aa11.79□□□□□ -0.52
CUX1-213ENST00000549414 STAB1Q9NY15 2570 aa11.79□□□□□ -0.52
CUX1-213ENST00000549414 IGLV4-69A0A075B6H9 119 aa11.79□□□□□ -0.52
CUX1-213ENST00000549414 IGKV2-24A0A0C4DH68 120 aa11.79□□□□□ -0.52
CUX1-213ENST00000549414 TEX49A0A1B0GTD5 131 aa11.79□□□□□ -0.52
CUX1-213ENST00000549414 TIRAPP58753 221 aa11.79□□□□□ -0.52
CUX1-213ENST00000549414 DSCR8Q96T75 97 aa11.78□□□□□ -0.52
CUX1-213ENST00000549414 IGHV4-28A0A0C4DH34 117 aa11.78□□□□□ -0.52
CUX1-213ENST00000549414 NDUFA1O15239 70 aa11.78□□□□□ -0.52
CUX1-213ENST00000549414 CDK2AP2O75956 126 aa11.78□□□□□ -0.52
CUX1-213ENST00000549414 SPTBN5Q9NRC6 3674 aaKnown RBP11.78□□□□□ -0.52
CUX1-213ENST00000549414 LYRM9A8MSI8 78 aa11.78□□□□□ -0.52
CUX1-213ENST00000549414 POM121L12Q8N7R1 296 aa11.78□□□□□ -0.52
CUX1-213ENST00000549414 SMIM9A6NGZ8 99 aa11.77□□□□□ -0.52
CUX1-213ENST00000549414 SPANXCQ9NY87 97 aa11.77□□□□□ -0.53
CUX1-213ENST00000549414 LINC00694P0DN24 101 aa11.76□□□□□ -0.53
CUX1-213ENST00000549414 UBE2D1P51668 147 aa11.76□□□□□ -0.53
CUX1-213ENST00000549414 IGKV3D-7A0A0C4DH55 119 aa11.76□□□□□ -0.53
CUX1-213ENST00000549414 H3BT86 120 aa11.76□□□□□ -0.53
CUX1-213ENST00000549414 RBMY1FQ15415 496 aaKnown RBP11.75□□□□□ -0.53
CUX1-213ENST00000549414 C9orf153Q5TBE3 101 aa11.75□□□□□ -0.53
CUX1-213ENST00000549414 IGLV1-51P01701 117 aa11.75□□□□□ -0.53
CUX1-213ENST00000549414 UBE2D3P61077 147 aa11.75□□□□□ -0.53
CUX1-213ENST00000549414 UBE2D2P62837 147 aa11.75□□□□□ -0.53
CUX1-213ENST00000549414 MRPS36P82909 103 aaKnown RBP11.75□□□□□ -0.53
CUX1-213ENST00000549414 KIF25-AS1Q9Y6Z4 181 aa11.74□□□□□ -0.53
CUX1-213ENST00000549414 SPATA25Q9BR10 227 aa11.74□□□□□ -0.53
CUX1-213ENST00000549414 LINC00242Q5T6M2 205 aa11.74□□□□□ -0.53
CUX1-213ENST00000549414 XAGE1AQ9HD64 81 aa11.74□□□□□ -0.53
CUX1-213ENST00000549414 CXCL5P42830 114 aa11.72□□□□□ -0.53
CUX1-213ENST00000549414 CHCHD7Q9BUK0 85 aa11.72□□□□□ -0.53
CUX1-213ENST00000549414 CDC42SE2Q9NRR3 84 aa11.72□□□□□ -0.53
CUX1-213ENST00000549414 SLPIP03973 132 aa11.72□□□□□ -0.53
CUX1-213ENST00000549414 ETDCA0A1B0GVM5 59 aa11.72□□□□□ -0.53
CUX1-213ENST00000549414 IGHV4-30-4P0DP06 118 aa11.72□□□□□ -0.53
CUX1-213ENST00000549414 MYO15AQ9UKN7 3530 aa11.71□□□□□ -0.53
CUX1-213ENST00000549414 C14orf132Q9NPU4 83 aa11.71□□□□□ -0.53
CUX1-213ENST00000549414 TEX15Q9BXT5 2789 aa11.71□□□□□ -0.53
CUX1-213ENST00000549414 ADGRG4Q8IZF6 3080 aa11.71□□□□□ -0.54
CUX1-213ENST00000549414 MIFP14174 115 aa11.71□□□□□ -0.54
CUX1-213ENST00000549414 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.7□□□□□ -0.54
CUX1-213ENST00000549414 RNF183Q96D59 192 aa11.7□□□□□ -0.54
CUX1-213ENST00000549414 Q9UF83 564 aa11.7□□□□□ -0.54
CUX1-213ENST00000549414 M0R2N4 97 aa11.7□□□□□ -0.54
CUX1-213ENST00000549414 COX6A2Q02221 97 aa11.7□□□□□ -0.54
CUX1-213ENST00000549414 B5MCH6 92 aa11.7□□□□□ -0.54
CUX1-213ENST00000549414 MT-ATP8P03928 68 aa11.7□□□□□ -0.54
CUX1-213ENST00000549414 LINC00959A0A1B0GUT2 108 aa11.69□□□□□ -0.54
CUX1-213ENST00000549414 LINC00315P59091 139 aa11.69□□□□□ -0.54
CUX1-213ENST00000549414 RETNQ9HD89 108 aa11.69□□□□□ -0.54
CUX1-213ENST00000549414 H7C423 109 aa11.69□□□□□ -0.54
CUX1-213ENST00000549414 IGLV4-60A0A075B6I1 120 aa11.68□□□□□ -0.54
CUX1-213ENST00000549414 IBA57-AS1B1ANH7 110 aa11.68□□□□□ -0.54
CUX1-213ENST00000549414 CLUHP3Q96NS8 147 aa11.68□□□□□ -0.54
CUX1-213ENST00000549414 TRBV30A0A0K0K1B3 111 aa11.67□□□□□ -0.54
CUX1-213ENST00000549414 CHD6Q8TD26 2715 aa11.66□□□□□ -0.54
CUX1-213ENST00000549414 ATMQ13315 3056 aa11.66□□□□□ -0.54
CUX1-213ENST00000549414 FAM236AA0A1B0GUQ0 79 aa11.66□□□□□ -0.54
CUX1-213ENST00000549414 FAM236BA0A1B0GV22 79 aa11.66□□□□□ -0.54
CUX1-213ENST00000549414 ADAMTSL4-AS1Q5T5F5 129 aa11.66□□□□□ -0.54
CUX1-213ENST00000549414 ACYP1P07311 99 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 NANOS2P60321 138 aaKnown RBP11.65□□□□□ -0.54
CUX1-213ENST00000549414 DMXL2Q8TDJ6 3036 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 SMIM1B2RUZ4 78 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 KPRPQ5T749 579 aaPredicted RBP11.65□□□□□ -0.54
CUX1-213ENST00000549414 UFSP1Q6NVU6 142 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 DIRC1Q969H9 104 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 FAM19A4Q96LR4 140 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 SPANXDQ9BXN6 97 aa11.65□□□□□ -0.54
CUX1-213ENST00000549414 COL6A5A8TX70 2615 aa11.64□□□□□ -0.55
CUX1-213ENST00000549414 BEAN1Q3B7T3 259 aa11.64□□□□□ -0.55
CUX1-213ENST00000549414 AMELXQ99217 191 aa11.64□□□□□ -0.55
CUX1-213ENST00000549414 A0A0J9YWU9 116 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 IL17DQ8TAD2 202 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 FHL2Q14192 279 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 C6orf99Q4VX62 202 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 CD164L2Q6UWJ8 174 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 TIMM17BO60830 172 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 C11orf72Q8NBR9 251 aa11.62□□□□□ -0.55
CUX1-213ENST00000549414 TRACP01848 142 aa11.61□□□□□ -0.55
CUX1-213ENST00000549414 KIR2DL5BQ8NHK3 375 aa11.61□□□□□ -0.55
CUX1-213ENST00000549414 hADV29S1A0JD25 119 aa11.6□□□□□ -0.55
CUX1-213ENST00000549414 A0A096LNI7 61 aa11.6□□□□□ -0.55
CUX1-213ENST00000549414 UBE2AP49459 152 aa11.6□□□□□ -0.55
CUX1-213ENST00000549414 Q8N2B8 174 aa11.6□□□□□ -0.55
CUX1-213ENST00000549414 LRCOL1A6NCL2 159 aa11.59□□□□□ -0.55
CUX1-213ENST00000549414 RBM3P98179 157 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms