RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 LINC00694P0DN24 101 aa9.8□□□□□ -0.84
VPS33A-208ENST00000543633 XCL2Q9UBD3 114 aa9.8□□□□□ -0.84
VPS33A-208ENST00000543633 CSPG4Q6UVK1 2322 aa9.79□□□□□ -0.84
VPS33A-208ENST00000543633 MEIG1Q5JSS6 88 aa9.79□□□□□ -0.84
VPS33A-208ENST00000543633 NTM-AS1Q6ZSK4 140 aa9.79□□□□□ -0.84
VPS33A-208ENST00000543633 SORL1Q92673 2214 aa9.79□□□□□ -0.84
VPS33A-208ENST00000543633 TEX15Q9BXT5 2789 aa9.79□□□□□ -0.84
VPS33A-208ENST00000543633 ITPR3Q14573 2671 aa9.79□□□□□ -0.84
VPS33A-208ENST00000543633 KHDC1LQ5JSQ8 128 aa9.78□□□□□ -0.84
VPS33A-208ENST00000543633 WFDC11Q8NEX6 87 aa9.78□□□□□ -0.84
VPS33A-208ENST00000543633 OVOL2Q9BRP0 275 aa9.78□□□□□ -0.84
VPS33A-208ENST00000543633 CREBBPQ92793 2442 aa9.78□□□□□ -0.84
VPS33A-208ENST00000543633 TRAV13-2A0A0B4J235 113 aa9.78□□□□□ -0.84
VPS33A-208ENST00000543633 CMC4P56277 68 aaPredicted RBP9.78□□□□□ -0.84
VPS33A-208ENST00000543633 TMEM243Q9BU79 118 aa9.78□□□□□ -0.84
VPS33A-208ENST00000543633 TRAV13-1A0A0B4J241 112 aa9.77□□□□□ -0.85
VPS33A-208ENST00000543633 HECTD1Q9ULT8 2610 aa9.77□□□□□ -0.85
VPS33A-208ENST00000543633 B5MCH6 92 aa9.77□□□□□ -0.85
VPS33A-208ENST00000543633 AKAP9Q99996 3911 aa9.76□□□□□ -0.85
VPS33A-208ENST00000543633 CCDC168Q8NDH2 2452 aa9.76□□□□□ -0.85
VPS33A-208ENST00000543633 UBE2L6O14933 153 aa9.76□□□□□ -0.85
VPS33A-208ENST00000543633 SDIM1Q6ZPB5 146 aa9.76□□□□□ -0.85
VPS33A-208ENST00000543633 INAFM2P0DMQ5 153 aa9.75□□□□□ -0.85
VPS33A-208ENST00000543633 RPL28P46779 137 aaKnown RBP9.75□□□□□ -0.85
VPS33A-208ENST00000543633 HIST2H2BDQ6DRA6 164 aa9.75□□□□□ -0.85
VPS33A-208ENST00000543633 Q6ZTI0 123 aa9.75□□□□□ -0.85
VPS33A-208ENST00000543633 LINC00643Q86TS7 51 aa9.75□□□□□ -0.85
VPS33A-208ENST00000543633 MXRA5Q9NR99 2828 aa9.75□□□□□ -0.85
VPS33A-208ENST00000543633 C16orf74Q96GX8 76 aa9.75□□□□□ -0.85
VPS33A-208ENST00000543633 CCDC179H3BU77 68 aa9.74□□□□□ -0.85
VPS33A-208ENST00000543633 CRPP02741 224 aa9.74□□□□□ -0.85
VPS33A-208ENST00000543633 CFAP161Q6P656 301 aa9.74□□□□□ -0.85
VPS33A-208ENST00000543633 SS18L2Q9UHA2 77 aa9.74□□□□□ -0.85
VPS33A-208ENST00000543633 TRBV6-4A0A1B0GX49 114 aa9.73□□□□□ -0.85
VPS33A-208ENST00000543633 FAM110AQ9BQ89 295 aa9.73□□□□□ -0.85
VPS33A-208ENST00000543633 NDUFA7O95182 113 aa9.73□□□□□ -0.85
VPS33A-208ENST00000543633 ATP5G1P05496 136 aa9.73□□□□□ -0.85
VPS33A-208ENST00000543633 BAALC-AS2P0C853 105 aa9.73□□□□□ -0.85
VPS33A-208ENST00000543633 COX7B2Q8TF08 81 aa9.73□□□□□ -0.85
VPS33A-208ENST00000543633 FLNAP21333 2647 aaKnown RBP9.72□□□□□ -0.85
VPS33A-208ENST00000543633 A0A0U1RRA0 63 aa9.72□□□□□ -0.85
VPS33A-208ENST00000543633 CXCL5P42830 114 aa9.71□□□□□ -0.86
VPS33A-208ENST00000543633 CCL24O00175 119 aa9.7□□□□□ -0.86
VPS33A-208ENST00000543633 KRTAP1-1Q07627 177 aa9.7□□□□□ -0.86
VPS33A-208ENST00000543633 C22orf24Q9Y442 160 aa9.7□□□□□ -0.86
VPS33A-208ENST00000543633 PLAC8L1A1L4L8 177 aa9.69□□□□□ -0.86
VPS33A-208ENST00000543633 IBA57-AS1B1ANH7 110 aa9.69□□□□□ -0.86
VPS33A-208ENST00000543633 FAM218AQ96MZ4 157 aa9.69□□□□□ -0.86
VPS33A-208ENST00000543633 NOP10Q9NPE3 64 aaKnown RBP9.69□□□□□ -0.86
VPS33A-208ENST00000543633 H0YGX0 51 aa9.68□□□□□ -0.86
VPS33A-208ENST00000543633 MIR7-3HGQ8N6C7 128 aa9.68□□□□□ -0.86
VPS33A-208ENST00000543633 SND1-IT1Q9HBX3 110 aa9.68□□□□□ -0.86
VPS33A-208ENST00000543633 MALP21145 153 aa9.68□□□□□ -0.86
VPS33A-208ENST00000543633 TLN2Q9Y4G6 2542 aa9.67□□□□□ -0.86
VPS33A-208ENST00000543633 GIG44P09565 113 aaPredicted RBP9.67□□□□□ -0.86
VPS33A-208ENST00000543633 LINC00337Q8N6G1 96 aa9.67□□□□□ -0.86
VPS33A-208ENST00000543633 SMCR5Q8TEV8 140 aa9.67□□□□□ -0.86
VPS33A-208ENST00000543633 OTOGQ6ZRI0 2925 aa9.67□□□□□ -0.86
VPS33A-208ENST00000543633 IGKV2-28A0A075B6P5 120 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 TRGV2A0A075B6R0 118 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 IGHV3OR16-9A0A0B4J2B5 98 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 IGKV2D-28P01615 120 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 TMEM126AQ9H061 195 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 A0A087WZ39 114 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 FAM236AA0A1B0GUQ0 79 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 FAM236BA0A1B0GV22 79 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 DNAJC9-AS1A6NH13 148 aa9.66□□□□□ -0.86
VPS33A-208ENST00000543633 TRBV6-8A0A0A6YYG3 113 aa9.65□□□□□ -0.86
VPS33A-208ENST00000543633 DNAL4O96015 105 aa9.65□□□□□ -0.86
VPS33A-208ENST00000543633 C5orf38Q86SI9 138 aa9.65□□□□□ -0.86
VPS33A-208ENST00000543633 ACANP16112 2415 aa9.65□□□□□ -0.87
VPS33A-208ENST00000543633 MYO9AB2RTY4 2548 aa9.65□□□□□ -0.87
VPS33A-208ENST00000543633 TRGV4A0A0C4DH28 118 aa9.65□□□□□ -0.87
VPS33A-208ENST00000543633 CHCHD5Q9BSY4 110 aa9.65□□□□□ -0.87
VPS33A-208ENST00000543633 CCL18P55774 89 aa9.63□□□□□ -0.87
VPS33A-208ENST00000543633 LINC00158P58513 81 aa9.63□□□□□ -0.87
VPS33A-208ENST00000543633 LINC01561Q8N1V8 128 aa9.63□□□□□ -0.87
VPS33A-208ENST00000543633 SMIM11BQ8TCY0 68 aa9.63□□□□□ -0.87
VPS33A-208ENST00000543633 OBSCN-AS1Q96MR7 158 aa9.63□□□□□ -0.87
VPS33A-208ENST00000543633 CSNK1G2-AS1Q8NCQ2 148 aa9.63□□□□□ -0.87
VPS33A-208ENST00000543633 LOC100131303A0A0U1RQF7 123 aa9.62□□□□□ -0.87
VPS33A-208ENST00000543633 LY6G6DO95868 133 aa9.62□□□□□ -0.87
VPS33A-208ENST00000543633 IGLV1-51P01701 117 aa9.62□□□□□ -0.87
VPS33A-208ENST00000543633 C19orf73Q9NVV2 129 aa9.62□□□□□ -0.87
VPS33A-208ENST00000543633 TOMM7Q9P0U1 55 aa9.62□□□□□ -0.87
VPS33A-208ENST00000543633 SONP18583 2426 aaKnown RBP9.62□□□□□ -0.87
VPS33A-208ENST00000543633 IGLV4-60A0A075B6I1 120 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 FHL2Q14192 279 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 C11orf44Q8N8P7 122 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 NOTCH2Q04721 2471 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 A0A1W2PRX2 142 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 GAGE2AQ6NT46 116 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 C16orf95Q9H693 158 aa9.61□□□□□ -0.87
VPS33A-208ENST00000543633 Q9HAA7 133 aa9.6□□□□□ -0.87
VPS33A-208ENST00000543633 ANK3Q12955 4377 aaKnown RBP9.6□□□□□ -0.87
VPS33A-208ENST00000543633 UQCRQO14949 82 aa9.6□□□□□ -0.87
VPS33A-208ENST00000543633 C3orf22Q8N5N4 141 aa9.6□□□□□ -0.87
VPS33A-208ENST00000543633 KIR2DL5BQ8NHK3 375 aa9.6□□□□□ -0.87
VPS33A-208ENST00000543633 A0A087WYN8 130 aa9.59□□□□□ -0.87
VPS33A-208ENST00000543633 LINC00959A0A1B0GUT2 108 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms