RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CARD19Q96LW7 228 aa11.96□□□□□ -0.5
USP28-208ENST00000540438 TENM3Q9P273 2699 aa11.96□□□□□ -0.5
USP28-208ENST00000540438 ANKRD29Q8N6D5 301 aa11.95□□□□□ -0.5
USP28-208ENST00000540438 HTN3P15516 51 aa11.95□□□□□ -0.5
USP28-208ENST00000540438 TRAV4A0A0B4J268 109 aa11.95□□□□□ -0.5
USP28-208ENST00000540438 CSNK1G2-AS1Q8NCQ2 148 aa11.94□□□□□ -0.5
USP28-208ENST00000540438 FOXI1Q12951 378 aa11.94□□□□□ -0.5
USP28-208ENST00000540438 IL17DQ8TAD2 202 aa11.93□□□□□ -0.5
USP28-208ENST00000540438 CDC42SE2Q9NRR3 84 aa11.93□□□□□ -0.5
USP28-208ENST00000540438 RPL13AP40429 203 aaKnown RBP11.93□□□□□ -0.5
USP28-208ENST00000540438 DNAJC30Q96LL9 226 aa11.93□□□□□ -0.5
USP28-208ENST00000540438 TMEM243Q9BU79 118 aa11.93□□□□□ -0.5
USP28-208ENST00000540438 SMIM1B2RUZ4 78 aa11.92□□□□□ -0.5
USP28-208ENST00000540438 SOSTDC1Q6X4U4 206 aa11.92□□□□□ -0.5
USP28-208ENST00000540438 SLC25A20O43772 301 aa11.92□□□□□ -0.5
USP28-208ENST00000540438 ZFAND6Q6FIF0 208 aa11.91□□□□□ -0.5
USP28-208ENST00000540438 IGLV10-54A0A075B6I4 117 aa11.91□□□□□ -0.5
USP28-208ENST00000540438 PFN2P35080 140 aa11.91□□□□□ -0.5
USP28-208ENST00000540438 FHL2Q14192 279 aa11.91□□□□□ -0.5
USP28-208ENST00000540438 C16orf74Q96GX8 76 aa11.91□□□□□ -0.5
USP28-208ENST00000540438 GYPEP15421 78 aa11.9□□□□□ -0.5
USP28-208ENST00000540438 MIAQ16674 131 aa11.9□□□□□ -0.5
USP28-208ENST00000540438 NTN5Q8WTR8 489 aaPredicted RBP11.9□□□□□ -0.5
USP28-208ENST00000540438 C1QTNF4Q9BXJ3 329 aa11.9□□□□□ -0.5
USP28-208ENST00000540438 EDA2RQ9HAV5 297 aa11.9□□□□□ -0.5
USP28-208ENST00000540438 TEX49A0A1B0GTD5 131 aa11.9□□□□□ -0.5
USP28-208ENST00000540438 XCL1P47992 114 aa11.89□□□□□ -0.51
USP28-208ENST00000540438 A0A1B0GV72 72 aa11.89□□□□□ -0.51
USP28-208ENST00000540438 DAZ2Q13117 558 aaKnown RBP11.89□□□□□ -0.51
USP28-208ENST00000540438 DAZ4Q86SG3 579 aaKnown RBP11.89□□□□□ -0.51
USP28-208ENST00000540438 DAZ3Q9NR90 486 aaKnown RBP11.89□□□□□ -0.51
USP28-208ENST00000540438 C16orf95Q9H693 158 aa11.88□□□□□ -0.51
USP28-208ENST00000540438 ICOSQ9Y6W8 199 aa11.88□□□□□ -0.51
USP28-208ENST00000540438 SIGMAR1Q99720 223 aa11.88□□□□□ -0.51
USP28-208ENST00000540438 HERVK_113P63121 156 aa11.87□□□□□ -0.51
USP28-208ENST00000540438 J3QR89 54 aa11.87□□□□□ -0.51
USP28-208ENST00000540438 MT-ATP8P03928 68 aa11.87□□□□□ -0.51
USP28-208ENST00000540438 FAM222AQ5U5X8 452 aa11.87□□□□□ -0.51
USP28-208ENST00000540438 LINC00308Q8TCZ7 52 aa11.86□□□□□ -0.51
USP28-208ENST00000540438 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.86□□□□□ -0.51
USP28-208ENST00000540438 TEX29Q8N6K0 151 aa11.86□□□□□ -0.51
USP28-208ENST00000540438 A0A0B4J2C4 111 aa11.85□□□□□ -0.51
USP28-208ENST00000540438 SBSPONQ8IVN8 264 aa11.85□□□□□ -0.51
USP28-208ENST00000540438 LINC01620Q4KN68 170 aa11.85□□□□□ -0.51
USP28-208ENST00000540438 TRBV10-1A0A0K0K1A3 114 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 TEN1Q86WV5 123 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 LINC00526Q96FQ7 95 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 F5H768 121 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 NDUFA1O15239 70 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 TIRAPP58753 221 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 C2orf82Q6UX34 121 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 TRBV6-8A0A0A6YYG3 113 aa11.84□□□□□ -0.51
USP28-208ENST00000540438 LINC00158P58513 81 aa11.83□□□□□ -0.52
USP28-208ENST00000540438 XGP55808 180 aa11.83□□□□□ -0.52
USP28-208ENST00000540438 CIRBPQ14011 172 aaKnown RBP11.83□□□□□ -0.52
USP28-208ENST00000540438 CDIP1Q9H305 208 aa11.83□□□□□ -0.52
USP28-208ENST00000540438 ANK2Q01484 3957 aa11.83□□□□□ -0.52
USP28-208ENST00000540438 TRBV20-1A0A075B6N2 111 aa11.82□□□□□ -0.52
USP28-208ENST00000540438 LYRM7Q5U5X0 104 aa11.82□□□□□ -0.52
USP28-208ENST00000540438 MIR7-3HGQ8N6C7 128 aa11.82□□□□□ -0.52
USP28-208ENST00000540438 CELA1Q9UNI1 258 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 X6R8D5 127 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 CLUHP3Q96NS8 147 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 IGLV5-39A0A0G2JS06 123 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 CRYBA4P53673 196 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 SPANXDQ9BXN6 97 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 SPANXCQ9NY87 97 aa11.81□□□□□ -0.52
USP28-208ENST00000540438 IGLV5-45A0A087WSX0 123 aa11.8□□□□□ -0.52
USP28-208ENST00000540438 TRBV6-4A0A1B0GX49 114 aa11.8□□□□□ -0.52
USP28-208ENST00000540438 ATXN8Q156A1 80 aa11.8□□□□□ -0.52
USP28-208ENST00000540438 PPDPFLQ8WWR9 84 aa11.8□□□□□ -0.52
USP28-208ENST00000540438 ATP6V0E2Q8NHE4 81 aa11.8□□□□□ -0.52
USP28-208ENST00000540438 PRR3P79522 188 aaKnown RBP11.79□□□□□ -0.52
USP28-208ENST00000540438 H7C423 109 aa11.79□□□□□ -0.52
USP28-208ENST00000540438 Q9HAA7 133 aa11.79□□□□□ -0.52
USP28-208ENST00000540438 MGAM2Q2M2H8 2515 aa11.78□□□□□ -0.52
USP28-208ENST00000540438 OVOL2Q9BRP0 275 aa11.78□□□□□ -0.52
USP28-208ENST00000540438 COX7B2Q8TF08 81 aa11.78□□□□□ -0.52
USP28-208ENST00000540438 FAM110AQ9BQ89 295 aa11.78□□□□□ -0.52
USP28-208ENST00000540438 PAX4O43316 350 aa11.77□□□□□ -0.52
USP28-208ENST00000540438 OXLD1Q5BKU9 147 aa11.77□□□□□ -0.52
USP28-208ENST00000540438 TRAV26-1A0A087WT03 109 aa11.77□□□□□ -0.53
USP28-208ENST00000540438 C9orf116Q5BN46 136 aaPredicted RBP11.77□□□□□ -0.53
USP28-208ENST00000540438 LINC00269Q8N2A0 174 aa11.77□□□□□ -0.53
USP28-208ENST00000540438 RETNQ9HD89 108 aa11.77□□□□□ -0.53
USP28-208ENST00000540438 IGHV4-28A0A0C4DH34 117 aa11.76□□□□□ -0.53
USP28-208ENST00000540438 COX6CP09669 75 aa11.76□□□□□ -0.53
USP28-208ENST00000540438 TRBV30A0A0K0K1B3 111 aa11.75□□□□□ -0.53
USP28-208ENST00000540438 C6orf226Q5I0X4 101 aa11.75□□□□□ -0.53
USP28-208ENST00000540438 OR13C6PQ8NH95 151 aa11.75□□□□□ -0.53
USP28-208ENST00000540438 SPATA25Q9BR10 227 aa11.75□□□□□ -0.53
USP28-208ENST00000540438 BAHCC1Q9P281 2608 aa11.75□□□□□ -0.53
USP28-208ENST00000540438 FAM218AQ96MZ4 157 aa11.75□□□□□ -0.53
USP28-208ENST00000540438 ATP5G1P05496 136 aa11.74□□□□□ -0.53
USP28-208ENST00000540438 LINC00959A0A1B0GUT2 108 aa11.74□□□□□ -0.53
USP28-208ENST00000540438 ANGP03950 147 aaKnown RBP11.74□□□□□ -0.53
USP28-208ENST00000540438 IGHV3OR16-9A0A0B4J2B5 98 aa11.73□□□□□ -0.53
USP28-208ENST00000540438 CMC4P56277 68 aaPredicted RBP11.73□□□□□ -0.53
USP28-208ENST00000540438 LINC00337Q8N6G1 96 aa11.73□□□□□ -0.53
USP28-208ENST00000540438 CSDC2Q9Y534 153 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms