RNA–Protein interactions for RNA: ENST00000536871.6

SMG6-203, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 2 BASIC

Gene SMG6, Length 1,865 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-203ENST00000536871 PRO1854Q9UHT4 67 aa9.58□□□□□ -0.88
SMG6-203ENST00000536871 TRAV8-3A0A0A6YYJ7 113 aa9.57□□□□□ -0.88
SMG6-203ENST00000536871 DEFB130BP0DP73 79 aa9.57□□□□□ -0.88
SMG6-203ENST00000536871 DEFB130AP0DP74 79 aa9.57□□□□□ -0.88
SMG6-203ENST00000536871 HERV-K104P63124 156 aa9.56□□□□□ -0.88
SMG6-203ENST00000536871 CFC1BP0CG36 223 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 CFC1P0CG37 223 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 MIAQ16674 131 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 CARD19Q96LW7 228 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 PPDPFQ9H3Y8 114 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 TRAV13-1A0A0B4J241 112 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 LOC100131303A0A0U1RQF7 123 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 MRPL23Q16540 153 aaKnown RBP9.55□□□□□ -0.88
SMG6-203ENST00000536871 MUSTN1Q8IVN3 82 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 CHCHD5Q9BSY4 110 aa9.55□□□□□ -0.88
SMG6-203ENST00000536871 A4D1N5 150 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 B5MCH6 92 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 NHLRC4P0CG21 123 aaPredicted RBP9.54□□□□□ -0.88
SMG6-203ENST00000536871 GYPEP15421 78 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 NDUFV3P56181 108 aaKnown RBP9.54□□□□□ -0.88
SMG6-203ENST00000536871 GAGE2BQ13066 116 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 GAGE2EQ4V326 116 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 FAM222AQ5U5X8 452 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 SFTA2Q6UW10 78 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 LITAFQ99732 161 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 GAGE2DQ9UEU5 116 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 NF1P21359 2839 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 HECTD1Q9ULT8 2610 aa9.54□□□□□ -0.88
SMG6-203ENST00000536871 A0A1B0GUV1 79 aa9.53□□□□□ -0.88
SMG6-203ENST00000536871 SHISA2Q6UWI4 295 aa9.53□□□□□ -0.88
SMG6-203ENST00000536871 SMIM1B2RUZ4 78 aa9.53□□□□□ -0.88
SMG6-203ENST00000536871 COX6A2Q02221 97 aa9.53□□□□□ -0.88
SMG6-203ENST00000536871 DEFB135Q30KP9 77 aa9.53□□□□□ -0.88
SMG6-203ENST00000536871 PAX4O43316 350 aa9.52□□□□□ -0.89
SMG6-203ENST00000536871 SNCGO76070 127 aa9.52□□□□□ -0.89
SMG6-203ENST00000536871 DAD1P61803 113 aa9.52□□□□□ -0.89
SMG6-203ENST00000536871 TMEM126AQ9H061 195 aa9.52□□□□□ -0.89
SMG6-203ENST00000536871 F5H768 121 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 ATP5G1P05496 136 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 PRSS2P07478 247 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 SPART-AS1P0CW21 52 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 IGHV4-28A0A0C4DH34 117 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 SCGB1C2P0DMR2 95 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 PSMB2P49721 201 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 SPATA3Q8NHX4 192 aa9.51□□□□□ -0.89
SMG6-203ENST00000536871 SETXQ7Z333 2677 aaKnown RBP9.51□□□□□ -0.89
SMG6-203ENST00000536871 C2CD3Q4AC94 2353 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 OTOGQ6ZRI0 2925 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 LOC107984156A0A0G2JMH3 177 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 A8MZ25 164 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 IGHV3-33P01772 117 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 TTC32Q5I0X7 151 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 ARL17AQ8IVW1 177 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 LINC01561Q8N1V8 128 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 Q9H8V8 135 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 BAHCC1Q9P281 2608 aa9.5□□□□□ -0.89
SMG6-203ENST00000536871 FN1P02751 2386 aaKnown RBP9.5□□□□□ -0.89
SMG6-203ENST00000536871 IGHV4-30-4P0DP06 118 aa9.49□□□□□ -0.89
SMG6-203ENST00000536871 Q8NAQ8 132 aa9.49□□□□□ -0.89
SMG6-203ENST00000536871 NOTCH2Q04721 2471 aa9.49□□□□□ -0.89
SMG6-203ENST00000536871 PRIMA1Q86XR5 153 aa9.49□□□□□ -0.89
SMG6-203ENST00000536871 ANKRD29Q8N6D5 301 aa9.49□□□□□ -0.89
SMG6-203ENST00000536871 ZNF625Q96I27 306 aaPredicted RBP9.49□□□□□ -0.89
SMG6-203ENST00000536871 SETD2Q9BYW2 2564 aaPredicted RBP9.48□□□□□ -0.89
SMG6-203ENST00000536871 RPL13AP40429 203 aaKnown RBP9.48□□□□□ -0.89
SMG6-203ENST00000536871 CUBNO60494 3623 aa9.48□□□□□ -0.89
SMG6-203ENST00000536871 TCL1BO95988 128 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 SS18Q15532 418 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 NSD1Q96L73 2696 aaPredicted RBP9.47□□□□□ -0.89
SMG6-203ENST00000536871 A0A087WZ39 114 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 IGHV3OR16-9A0A0B4J2B5 98 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 TRBV30A0A0K0K1B3 111 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 ADAMTSL4-AS1Q5T5F5 129 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 SMIM20Q8N5G0 67 aa9.47□□□□□ -0.89
SMG6-203ENST00000536871 IGLV4-60A0A075B6I1 120 aa9.46□□□□□ -0.9
SMG6-203ENST00000536871 COX6CP09669 75 aa9.46□□□□□ -0.9
SMG6-203ENST00000536871 COX7B2Q8TF08 81 aa9.46□□□□□ -0.9
SMG6-203ENST00000536871 LINC00959A0A1B0GUT2 108 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 SLC25A20O43772 301 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 Q1RN00 199 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 MEIG1Q5JSS6 88 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 C3orf56Q8N813 242 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 FAM240AA0A1B0GVK7 77 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 EGFEM1PQ0D2K5 195 aa9.45□□□□□ -0.9
SMG6-203ENST00000536871 LINC00308Q8TCZ7 52 aa9.44□□□□□ -0.9
SMG6-203ENST00000536871 ICOSQ9Y6W8 199 aa9.43□□□□□ -0.9
SMG6-203ENST00000536871 CCDC179H3BU77 68 aa9.42□□□□□ -0.9
SMG6-203ENST00000536871 ATXN8Q156A1 80 aa9.42□□□□□ -0.9
SMG6-203ENST00000536871 KRTAP24-1Q3LI83 254 aa9.42□□□□□ -0.9
SMG6-203ENST00000536871 JMJD1CQ15652 2540 aa9.42□□□□□ -0.9
SMG6-203ENST00000536871 H3BNG1 76 aa9.42□□□□□ -0.9
SMG6-203ENST00000536871 IBA57-AS1B1ANH7 110 aa9.41□□□□□ -0.9
SMG6-203ENST00000536871 LELP1Q5T871 98 aa9.41□□□□□ -0.9
SMG6-203ENST00000536871 EIF4EBP3O60516 100 aaPredicted RBP9.4□□□□□ -0.9
SMG6-203ENST00000536871 IMUPQ9GZP8 106 aa9.4□□□□□ -0.9
SMG6-203ENST00000536871 TRAV8-4A0A0B4J246 113 aa9.4□□□□□ -0.91
SMG6-203ENST00000536871 IGKV3OR2-268A0A0C4DH90 116 aa9.4□□□□□ -0.91
SMG6-203ENST00000536871 DEFB4AO15263 64 aa9.4□□□□□ -0.91
SMG6-203ENST00000536871 HIVEP1P15822 2718 aa9.39□□□□□ -0.91
SMG6-203ENST00000536871 TRBV7-7A0A0K0K1E9 115 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms