RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 A0A0J9YXY3 114 aa14.3□□□□□ -0.12
VPS28-209ENST00000528142 SMIM1B2RUZ4 78 aa14.3□□□□□ -0.12
VPS28-209ENST00000528142 NHP2Q9NX24 153 aaKnown RBP14.3□□□□□ -0.12
VPS28-209ENST00000528142 NDUFA12Q9UI09 145 aa14.3□□□□□ -0.12
VPS28-209ENST00000528142 ICOSQ9Y6W8 199 aa14.3□□□□□ -0.12
VPS28-209ENST00000528142 TMEM262E9PQX1 116 aa14.29□□□□□ -0.12
VPS28-209ENST00000528142 SH2D6Q7Z4S9 175 aa14.29□□□□□ -0.12
VPS28-209ENST00000528142 C9orf118A6NHY6 69 aa14.29□□□□□ -0.12
VPS28-209ENST00000528142 K7EIL1 84 aa14.28□□□□□ -0.12
VPS28-209ENST00000528142 K7ERJ3 54 aa14.28□□□□□ -0.12
VPS28-209ENST00000528142 IGHV3-30P01768 117 aa14.28□□□□□ -0.12
VPS28-209ENST00000528142 IGHV3-30-5P0DP03 117 aa14.28□□□□□ -0.12
VPS28-209ENST00000528142 A0A1B0GWB2 263 aa14.27□□□□□ -0.12
VPS28-209ENST00000528142 RAB37Q96AX2 223 aa14.27□□□□□ -0.12
VPS28-209ENST00000528142 IGKV3OR2-268A0A0C4DH90 116 aa14.27□□□□□ -0.13
VPS28-209ENST00000528142 A0A0J9YWU9 116 aa14.27□□□□□ -0.13
VPS28-209ENST00000528142 KRTAP21-3Q3LHN1 58 aa14.27□□□□□ -0.13
VPS28-209ENST00000528142 LINC00959A0A1B0GUT2 108 aa14.26□□□□□ -0.13
VPS28-209ENST00000528142 Q6ZTC4 211 aa14.26□□□□□ -0.13
VPS28-209ENST00000528142 LITAFQ99732 161 aa14.26□□□□□ -0.13
VPS28-209ENST00000528142 H3BNG1 76 aa14.25□□□□□ -0.13
VPS28-209ENST00000528142 IGHV3OR16-9A0A0B4J2B5 98 aa14.25□□□□□ -0.13
VPS28-209ENST00000528142 NDUFA1O15239 70 aa14.25□□□□□ -0.13
VPS28-209ENST00000528142 LELP1Q5T871 98 aa14.25□□□□□ -0.13
VPS28-209ENST00000528142 VAMP3Q15836 100 aa14.24□□□□□ -0.13
VPS28-209ENST00000528142 TMEM238C9JI98 176 aa14.23□□□□□ -0.13
VPS28-209ENST00000528142 H3BUT2 72 aa14.23□□□□□ -0.13
VPS28-209ENST00000528142 TMEM238LA0A1B0GVL6 79 aa14.22□□□□□ -0.13
VPS28-209ENST00000528142 A6NJY4 79 aa14.22□□□□□ -0.13
VPS28-209ENST00000528142 UBE2V1Q13404 147 aa14.22□□□□□ -0.13
VPS28-209ENST00000528142 NAA38Q9BRA0 125 aaKnown RBP14.22□□□□□ -0.13
VPS28-209ENST00000528142 TM2D3Q9BRN9 247 aa14.22□□□□□ -0.13
VPS28-209ENST00000528142 SPATA25Q9BR10 227 aa14.21□□□□□ -0.13
VPS28-209ENST00000528142 ADAMTSL4-AS1Q5T5F5 129 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 LYPD5Q6UWN5 251 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 Q8N3U1 123 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 TENM3Q9P273 2699 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 A0A087WZ39 114 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 TIMM17BO60830 172 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 NANOS2P60321 138 aaKnown RBP14.2□□□□□ -0.14
VPS28-209ENST00000528142 C11orf45Q8TAV5 145 aa14.2□□□□□ -0.14
VPS28-209ENST00000528142 ZNF625Q96I27 306 aaPredicted RBP14.19□□□□□ -0.14
VPS28-209ENST00000528142 Q9H8V8 135 aa14.19□□□□□ -0.14
VPS28-209ENST00000528142 CCL25O15444 150 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 SS18Q15532 418 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 DEFB121Q5J5C9 76 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 MUSTN1Q8IVN3 82 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 LINC00269Q8N2A0 174 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 SPANXDQ9BXN6 97 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 SPANXCQ9NY87 97 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 IGLL5B9A064 214 aa14.18□□□□□ -0.14
VPS28-209ENST00000528142 A0A1W2PPM0 123 aa14.17□□□□□ -0.14
VPS28-209ENST00000528142 CLPSL2Q6UWE3 100 aa14.17□□□□□ -0.14
VPS28-209ENST00000528142 C5orf38Q86SI9 138 aa14.16□□□□□ -0.14
VPS28-209ENST00000528142 ANGP03950 147 aaKnown RBP14.15□□□□□ -0.14
VPS28-209ENST00000528142 DEFB131BA0A096LNP1 70 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 A4D1N5 150 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 CFC1BP0CG36 223 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 CFC1P0CG37 223 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 XCL1P47992 114 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 MIAQ16674 131 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 MRAPQ8TCY5 172 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 COX7B2Q8TF08 81 aa14.15□□□□□ -0.14
VPS28-209ENST00000528142 RPL24P83731 157 aaKnown RBP14.14□□□□□ -0.15
VPS28-209ENST00000528142 REG3AQ06141 175 aa14.14□□□□□ -0.15
VPS28-209ENST00000528142 APOMO95445 188 aa14.13□□□□□ -0.15
VPS28-209ENST00000528142 HERV-K104P63124 156 aa14.13□□□□□ -0.15
VPS28-209ENST00000528142 PRSS2P07478 247 aa14.12□□□□□ -0.15
VPS28-209ENST00000528142 LINC01561Q8N1V8 128 aa14.12□□□□□ -0.15
VPS28-209ENST00000528142 EIF4EBP3O60516 100 aaPredicted RBP14.11□□□□□ -0.15
VPS28-209ENST00000528142 FABP2P12104 132 aa14.11□□□□□ -0.15
VPS28-209ENST00000528142 CIRBPQ14011 172 aaKnown RBP14.11□□□□□ -0.15
VPS28-209ENST00000528142 GAGE10A6NGK3 116 aa14.11□□□□□ -0.15
VPS28-209ENST00000528142 K7EP34 96 aa14.11□□□□□ -0.15
VPS28-209ENST00000528142 CD164L2Q6UWJ8 174 aa14.11□□□□□ -0.15
VPS28-209ENST00000528142 CHCHD10Q8WYQ3 142 aaPredicted RBP14.1□□□□□ -0.15
VPS28-209ENST00000528142 PRR34Q9NV39 138 aa14.1□□□□□ -0.15
VPS28-209ENST00000528142 PGPEP1Q9NXJ5 209 aa14.1□□□□□ -0.15
VPS28-209ENST00000528142 TOMM7Q9P0U1 55 aa14.1□□□□□ -0.15
VPS28-209ENST00000528142 IFITM1P13164 125 aa14.09□□□□□ -0.15
VPS28-209ENST00000528142 HUWE1Q7Z6Z7 4374 aaKnown RBP14.09□□□□□ -0.15
VPS28-209ENST00000528142 SPCS1Q9Y6A9 102 aa14.08□□□□□ -0.15
VPS28-209ENST00000528142 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.08□□□□□ -0.16
VPS28-209ENST00000528142 A0A0B4J2C4 111 aa14.08□□□□□ -0.16
VPS28-209ENST00000528142 ESRGQ1W209 222 aa14.08□□□□□ -0.16
VPS28-209ENST00000528142 GTF2H5Q6ZYL4 71 aa14.08□□□□□ -0.16
VPS28-209ENST00000528142 DAND5Q8N907 189 aa14.08□□□□□ -0.16
VPS28-209ENST00000528142 TSPAN13O95857 204 aa14.07□□□□□ -0.16
VPS28-209ENST00000528142 PRO1854Q9UHT4 67 aa14.07□□□□□ -0.16
VPS28-209ENST00000528142 IGLV10-54A0A075B6I4 117 aa14.06□□□□□ -0.16
VPS28-209ENST00000528142 WFDC10BQ8IUB3 73 aa14.06□□□□□ -0.16
VPS28-209ENST00000528142 KLK12Q9UKR0 248 aa14.06□□□□□ -0.16
VPS28-209ENST00000528142 TRAV10A0A0B4J240 114 aa14.06□□□□□ -0.16
VPS28-209ENST00000528142 MEIG1Q5JSS6 88 aa14.06□□□□□ -0.16
VPS28-209ENST00000528142 ENHOQ6UWT2 76 aa14.06□□□□□ -0.16
VPS28-209ENST00000528142 NPC2P61916 151 aa14.05□□□□□ -0.16
VPS28-209ENST00000528142 FOXI1Q12951 378 aa14.05□□□□□ -0.16
VPS28-209ENST00000528142 A0A0U1RRA0 63 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 COX7A2LO14548 114 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 IGHV3-33P01772 117 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms