RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KIAA1644Q3SXP7 199 aa6.66□□□□□ -1.34
CD44-227ENST00000528086 C10orf25Q5T742 122 aa6.66□□□□□ -1.34
CD44-227ENST00000528086 Q8N8P6 123 aa6.66□□□□□ -1.34
CD44-227ENST00000528086 IMMP2LQ96T52 175 aa6.66□□□□□ -1.34
CD44-227ENST00000528086 PYGO1Q9Y3Y4 419 aa6.66□□□□□ -1.34
CD44-227ENST00000528086 A0A0J9YXV3 536 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 A0A1W2PNN7 141 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 IGIPA6NJ69 53 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.65□□□□□ -1.34
CD44-227ENST00000528086 IFI27P40305 119 aaPredicted RBP6.65□□□□□ -1.34
CD44-227ENST00000528086 KIAA0087Q14695 138 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 LINC00242Q5T6M2 205 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 COMMD7Q86VX2 200 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 STPG4Q8N801 248 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 SEC11CQ9BY50 192 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 LAMTOR2Q9Y2Q5 125 aa6.65□□□□□ -1.34
CD44-227ENST00000528086 TMEM18Q96B42 140 aa6.64□□□□□ -1.35
CD44-227ENST00000528086 AMELXQ99217 191 aa6.64□□□□□ -1.35
CD44-227ENST00000528086 MAP1LC3AQ9H492 121 aa6.64□□□□□ -1.35
CD44-227ENST00000528086 IFITM10A6NMD0 228 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 J3QL48 77 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 ZNF561-AS1K7EIQ3 104 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 UBE2D1P51668 147 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 PTTG1IPP53801 180 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 C2orf66Q6UXQ4 117 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 KRTAP7-1Q8IUC3 87 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 C2orf48Q96LS8 159 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 CTDSP1Q9GZU7 261 aa6.63□□□□□ -1.35
CD44-227ENST00000528086 CARHSP1Q9Y2V2 147 aaKnown RBP6.63□□□□□ -1.35
CD44-227ENST00000528086 OXTP01178 125 aa6.62□□□□□ -1.35
CD44-227ENST00000528086 MALP21145 153 aa6.62□□□□□ -1.35
CD44-227ENST00000528086 SPAG11BQ08648 103 aa6.62□□□□□ -1.35
CD44-227ENST00000528086 SMAGPQ0VAQ4 97 aa6.62□□□□□ -1.35
CD44-227ENST00000528086 DPH3Q96FX2 82 aa6.62□□□□□ -1.35
CD44-227ENST00000528086 TMEM141Q96I45 108 aa6.62□□□□□ -1.35
CD44-227ENST00000528086 TRAV9-1A0A075B6T8 112 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 A0A087WZ39 114 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 LINC01546A6NGU7 62 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 RAB5AP20339 215 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 PRR3P79522 188 aaKnown RBP6.61□□□□□ -1.35
CD44-227ENST00000528086 UNQ6190/PRO20217Q6UXQ8 127 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 KRTAP11-1Q8IUC1 163 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 ORAOV1Q8WV07 137 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 CAMK2N2Q96S95 79 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 ALKBH7Q9BT30 221 aaPredicted RBP6.61□□□□□ -1.35
CD44-227ENST00000528086 C6orf48Q9UBA6 75 aa6.61□□□□□ -1.35
CD44-227ENST00000528086 LOC107984640A0A0U1RRK4 108 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 APOMO95445 188 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 GAGE2BQ13066 116 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 RNF151Q2KHN1 245 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 FAM19A3Q7Z5A8 133 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 OR10D4PQ8NGN7 298 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 URB1-AS1Q96HZ7 61 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 CYSLTR1Q9Y271 337 aa6.6□□□□□ -1.35
CD44-227ENST00000528086 SRSF9Q13242 221 aaKnown RBP eCLIP6.59□□□□□ -1.35
CD44-227ENST00000528086 C2orf82Q6UX34 121 aa6.59□□□□□ -1.35
CD44-227ENST00000528086 Q6ZRP5 223 aa6.59□□□□□ -1.35
CD44-227ENST00000528086 TOMM6Q96B49 74 aa6.59□□□□□ -1.35
CD44-227ENST00000528086 GNB1LQ9BYB4 327 aa6.59□□□□□ -1.35
CD44-227ENST00000528086 NXT2Q9NPJ8 142 aaKnown RBP6.59□□□□□ -1.35
CD44-227ENST00000528086 MRPL35Q9NZE8 188 aaKnown RBP6.59□□□□□ -1.35
CD44-227ENST00000528086 FAM168BA1KXE4 195 aa6.58□□□□□ -1.36
CD44-227ENST00000528086 K7EMI3 77 aa6.58□□□□□ -1.36
CD44-227ENST00000528086 ODF1Q14990 250 aa6.58□□□□□ -1.36
CD44-227ENST00000528086 ORMDL2Q53FV1 153 aa6.58□□□□□ -1.36
CD44-227ENST00000528086 C9orf116Q5BN46 136 aaPredicted RBP6.58□□□□□ -1.36
CD44-227ENST00000528086 A0A096LNJ9 63 aa6.57□□□□□ -1.36
CD44-227ENST00000528086 TGIF2-C20orf24A0A0A6YYL0 155 aa6.57□□□□□ -1.36
CD44-227ENST00000528086 TLX1NBP0CAT3 122 aa6.57□□□□□ -1.36
CD44-227ENST00000528086 TEX43Q6ZNM6 134 aa6.57□□□□□ -1.36
CD44-227ENST00000528086 YPEL4Q96NS1 127 aa6.57□□□□□ -1.36
CD44-227ENST00000528086 LINC00474Q9P2X8 69 aa6.57□□□□□ -1.36
CD44-227ENST00000528086 NPSP0C0P6 89 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 RPL18AQ02543 176 aaKnown RBP6.56□□□□□ -1.36
CD44-227ENST00000528086 RHEBQ15382 184 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 PHF5AQ7RTV0 110 aaKnown RBP6.56□□□□□ -1.36
CD44-227ENST00000528086 LINC01561Q8N1V8 128 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 C7orf33Q8WU49 177 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 TIMM17AQ99595 171 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 MRPL18Q9H0U6 180 aaKnown RBP6.56□□□□□ -1.36
CD44-227ENST00000528086 RPS10P5Q9NQ39 176 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 CDKN2A-AS1Q9UH64 79 aa6.56□□□□□ -1.36
CD44-227ENST00000528086 F8WDY8 70 aa6.55□□□□□ -1.36
CD44-227ENST00000528086 NDUFA1O15239 70 aa6.55□□□□□ -1.36
CD44-227ENST00000528086 C9orf129Q5T035 196 aaKnown RBP6.55□□□□□ -1.36
CD44-227ENST00000528086 VCX2Q9H322 139 aa6.55□□□□□ -1.36
CD44-227ENST00000528086 ERASQ7Z444 233 aa6.54□□□□□ -1.36
CD44-227ENST00000528086 PSORS1C2Q9UIG4 136 aa6.54□□□□□ -1.36
CD44-227ENST00000528086 IGLV5-45A0A087WSX0 123 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 S100PP25815 95 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 FABP9Q0Z7S8 132 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 C18orf32Q8TCD1 76 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 LINC01600Q96MT4 127 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 SCGB3A1Q96QR1 104 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 C2orf88Q9BSF0 95 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 CST9LQ9H4G1 147 aa6.53□□□□□ -1.36
CD44-227ENST00000528086 SMIM1B2RUZ4 78 aa6.52□□□□□ -1.37
CD44-227ENST00000528086 APOC3P02656 99 aa6.52□□□□□ -1.37
CD44-227ENST00000528086 KRTAP10-8P60410 259 aa6.52□□□□□ -1.37
CD44-227ENST00000528086 GAGE2EQ4V326 116 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms