RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 S100PP25815 95 aa13.07□□□□□ -0.32
VPS28-206ENST00000526734 MAJINQ3KP22 176 aa13.07□□□□□ -0.32
VPS28-206ENST00000526734 ORMDL2Q53FV1 153 aa13.07□□□□□ -0.32
VPS28-206ENST00000526734 C7orf33Q8WU49 177 aa13.07□□□□□ -0.32
VPS28-206ENST00000526734 NXT2Q9NPJ8 142 aaKnown RBP13.07□□□□□ -0.32
VPS28-206ENST00000526734 CYSLTR1Q9Y271 337 aa13.07□□□□□ -0.32
VPS28-206ENST00000526734 LOC389332A0A1B0GUA5 103 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 F8WDY8 70 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 NPSP0C0P6 89 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 C5orf38Q86SI9 138 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 COMMD7Q86VX2 200 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 LINC00526Q96FQ7 95 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 CAMK2N2Q96S95 79 aa13.06□□□□□ -0.32
VPS28-206ENST00000526734 A0A096LNI7 61 aa13.05□□□□□ -0.32
VPS28-206ENST00000526734 IGHV3OR16-9A0A0B4J2B5 98 aa13.05□□□□□ -0.32
VPS28-206ENST00000526734 G0S2P27469 103 aa13.05□□□□□ -0.32
VPS28-206ENST00000526734 TMEM141Q96I45 108 aa13.05□□□□□ -0.32
VPS28-206ENST00000526734 OPRPNQ99935 248 aaPredicted RBP13.05□□□□□ -0.32
VPS28-206ENST00000526734 IGLV4-3A0A075B6K6 122 aa13.04□□□□□ -0.32
VPS28-206ENST00000526734 TGIF2-C20orf24A0A0A6YYL0 155 aa13.04□□□□□ -0.32
VPS28-206ENST00000526734 LOC107984640A0A0U1RRK4 108 aa13.04□□□□□ -0.32
VPS28-206ENST00000526734 OXTP01178 125 aa13.04□□□□□ -0.32
VPS28-206ENST00000526734 SPAG11BQ08648 103 aa13.04□□□□□ -0.32
VPS28-206ENST00000526734 STPG4Q8N801 248 aa13.04□□□□□ -0.32
VPS28-206ENST00000526734 COX19Q49B96 90 aa13.03□□□□□ -0.32
VPS28-206ENST00000526734 C2orf66Q6UXQ4 117 aa13.03□□□□□ -0.32
VPS28-206ENST00000526734 Q6ZN92 141 aa13.03□□□□□ -0.32
VPS28-206ENST00000526734 TEX43Q6ZNM6 134 aa13.03□□□□□ -0.32
VPS28-206ENST00000526734 RNF151Q2KHN1 245 aa13.02□□□□□ -0.33
VPS28-206ENST00000526734 Q6ZRU5 148 aa13.02□□□□□ -0.33
VPS28-206ENST00000526734 C2orf88Q9BSF0 95 aa13.02□□□□□ -0.33
VPS28-206ENST00000526734 ORAOV1Q8WV07 137 aa13.01□□□□□ -0.33
VPS28-206ENST00000526734 HERC1Q15751 4861 aa13.01□□□□□ -0.33
VPS28-206ENST00000526734 PTTG1IPP53801 180 aa13□□□□□ -0.33
VPS28-206ENST00000526734 RHEBQ15382 184 aa13□□□□□ -0.33
VPS28-206ENST00000526734 PAPPA-AS1Q5QFB9 102 aa13□□□□□ -0.33
VPS28-206ENST00000526734 C10orf91Q5T1B1 145 aa13□□□□□ -0.33
VPS28-206ENST00000526734 GNB1LQ9BYB4 327 aa13□□□□□ -0.33
VPS28-206ENST00000526734 CARHSP1Q9Y2V2 147 aaKnown RBP13□□□□□ -0.33
VPS28-206ENST00000526734 A0A087WZ39 114 aa12.98□□□□□ -0.33
VPS28-206ENST00000526734 MT-ND6P03923 174 aa12.98□□□□□ -0.33
VPS28-206ENST00000526734 LINC00242Q5T6M2 205 aa12.98□□□□□ -0.33
VPS28-206ENST00000526734 LINC01561Q8N1V8 128 aa12.98□□□□□ -0.33
VPS28-206ENST00000526734 MRPL35Q9NZE8 188 aaKnown RBP12.98□□□□□ -0.33
VPS28-206ENST00000526734 LINC01549A6NIU2 74 aa12.97□□□□□ -0.33
VPS28-206ENST00000526734 NDUFA1O15239 70 aa12.97□□□□□ -0.33
VPS28-206ENST00000526734 AMELXQ99217 191 aa12.97□□□□□ -0.33
VPS28-206ENST00000526734 VCX2Q9H322 139 aa12.97□□□□□ -0.33
VPS28-206ENST00000526734 UBE2D1P51668 147 aa12.96□□□□□ -0.33
VPS28-206ENST00000526734 IGIPA6NJ69 53 aa12.95□□□□□ -0.34
VPS28-206ENST00000526734 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.95□□□□□ -0.34
VPS28-206ENST00000526734 HNRNPA3P51991 378 aaKnown RBP12.95□□□□□ -0.34
VPS28-206ENST00000526734 GAGE2BQ13066 116 aa12.95□□□□□ -0.34
VPS28-206ENST00000526734 KIAA1644Q3SXP7 199 aa12.95□□□□□ -0.34
VPS28-206ENST00000526734 TIMM17AQ99595 171 aa12.95□□□□□ -0.34
VPS28-206ENST00000526734 SEC11AP67812 179 aa12.94□□□□□ -0.34
VPS28-206ENST00000526734 LINC00173Q6ZV60 143 aa12.93□□□□□ -0.34
VPS28-206ENST00000526734 FAM19A3Q7Z5A8 133 aa12.93□□□□□ -0.34
VPS28-206ENST00000526734 TOMM6Q96B49 74 aa12.93□□□□□ -0.34
VPS28-206ENST00000526734 RPS10P5Q9NQ39 176 aa12.93□□□□□ -0.34
VPS28-206ENST00000526734 RPL18AQ02543 176 aaKnown RBP12.92□□□□□ -0.34
VPS28-206ENST00000526734 ALKBH7Q9BT30 221 aaPredicted RBP12.92□□□□□ -0.34
VPS28-206ENST00000526734 PRR3P79522 188 aaKnown RBP12.91□□□□□ -0.34
VPS28-206ENST00000526734 LINC01546A6NGU7 62 aa12.9□□□□□ -0.34
VPS28-206ENST00000526734 TLX1NBP0CAT3 122 aa12.9□□□□□ -0.34
VPS28-206ENST00000526734 ERASQ7Z444 233 aa12.9□□□□□ -0.34
VPS28-206ENST00000526734 HERVK_113P63121 156 aa12.89□□□□□ -0.35
VPS28-206ENST00000526734 KIAA0087Q14695 138 aa12.89□□□□□ -0.35
VPS28-206ENST00000526734 NDUFA5Q16718 116 aa12.89□□□□□ -0.35
VPS28-206ENST00000526734 MRPL18Q9H0U6 180 aaKnown RBP12.89□□□□□ -0.35
VPS28-206ENST00000526734 TRBV30A0A0K0K1B3 111 aa12.88□□□□□ -0.35
VPS28-206ENST00000526734 FABP9Q0Z7S8 132 aa12.88□□□□□ -0.35
VPS28-206ENST00000526734 A0A0J9YXV3 536 aa12.87□□□□□ -0.35
VPS28-206ENST00000526734 UNQ6190/PRO20217Q6UXQ8 127 aa12.87□□□□□ -0.35
VPS28-206ENST00000526734 Q6ZRP5 223 aa12.87□□□□□ -0.35
VPS28-206ENST00000526734 SCGB3A1Q96QR1 104 aa12.87□□□□□ -0.35
VPS28-206ENST00000526734 C6orf48Q9UBA6 75 aa12.87□□□□□ -0.35
VPS28-206ENST00000526734 PKHD1L1Q86WI1 4243 aa12.87□□□□□ -0.35
VPS28-206ENST00000526734 PRSS2P07478 247 aa12.86□□□□□ -0.35
VPS28-206ENST00000526734 C9orf116Q5BN46 136 aaPredicted RBP12.86□□□□□ -0.35
VPS28-206ENST00000526734 C10orf25Q5T742 122 aa12.86□□□□□ -0.35
VPS28-206ENST00000526734 ZC2HC1BQ5TFG8 222 aa12.86□□□□□ -0.35
VPS28-206ENST00000526734 FA2HQ7L5A8 372 aa12.86□□□□□ -0.35
VPS28-206ENST00000526734 PACRGQ96M98 296 aaPredicted RBP12.86□□□□□ -0.35
VPS28-206ENST00000526734 GEMIN7Q9H840 131 aaKnown RBP12.86□□□□□ -0.35
VPS28-206ENST00000526734 SMCO4Q9NRQ5 59 aa12.86□□□□□ -0.35
VPS28-206ENST00000526734 SNAPINO95295 136 aa12.85□□□□□ -0.35
VPS28-206ENST00000526734 SVBPQ8N300 66 aa12.85□□□□□ -0.35
VPS28-206ENST00000526734 A0A1W2PNN7 141 aa12.84□□□□□ -0.35
VPS28-206ENST00000526734 APOC3P02656 99 aa12.84□□□□□ -0.35
VPS28-206ENST00000526734 Q8IZM0 81 aa12.84□□□□□ -0.35
VPS28-206ENST00000526734 SERTAD4-AS1Q5TG53 156 aa12.83□□□□□ -0.36
VPS28-206ENST00000526734 LRP1Q07954 4544 aaKnown RBP12.82□□□□□ -0.36
VPS28-206ENST00000526734 FAT3Q8TDW7 4589 aa12.81□□□□□ -0.36
VPS28-206ENST00000526734 NDUFC2-KCTD14E9PQ53 114 aa12.81□□□□□ -0.36
VPS28-206ENST00000526734 CKS1BP61024 79 aa12.81□□□□□ -0.36
VPS28-206ENST00000526734 C6orf226Q5I0X4 101 aa12.81□□□□□ -0.36
VPS28-206ENST00000526734 SPINK6Q6UWN8 80 aa12.81□□□□□ -0.36
VPS28-206ENST00000526734 CDKN2A-AS1Q9UH64 79 aa12.81□□□□□ -0.36
VPS28-206ENST00000526734 TRAPPC1Q9Y5R8 145 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms