RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LINC00242Q5T6M2 205 aa9.88□□□□□ -0.83
NUP54-213ENST00000513352 GEMIN7Q9H840 131 aaKnown RBP9.88□□□□□ -0.83
NUP54-213ENST00000513352 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.87□□□□□ -0.83
NUP54-213ENST00000513352 A0A0J9YXV3 536 aa9.87□□□□□ -0.83
NUP54-213ENST00000513352 S100A6P06703 90 aa9.87□□□□□ -0.83
NUP54-213ENST00000513352 SEC11AP67812 179 aa9.87□□□□□ -0.83
NUP54-213ENST00000513352 CFAP161Q6P656 301 aa9.87□□□□□ -0.83
NUP54-213ENST00000513352 FRAS1Q86XX4 4008 aa9.86□□□□□ -0.83
NUP54-213ENST00000513352 COX6A2Q02221 97 aa9.86□□□□□ -0.83
NUP54-213ENST00000513352 HIGD2BQ4VC39 106 aa9.86□□□□□ -0.83
NUP54-213ENST00000513352 COA6Q5JTJ3 125 aaKnown RBP9.86□□□□□ -0.83
NUP54-213ENST00000513352 Q8N814 137 aa9.86□□□□□ -0.83
NUP54-213ENST00000513352 hDV102S1A0JD36 115 aa9.85□□□□□ -0.83
NUP54-213ENST00000513352 FUSP35637 526 aaKnown RBP eCLIP9.85□□□□□ -0.83
NUP54-213ENST00000513352 HERVK_113P63121 156 aa9.85□□□□□ -0.83
NUP54-213ENST00000513352 SPATA12Q7Z6I5 190 aa9.85□□□□□ -0.83
NUP54-213ENST00000513352 IGHV3OR16-9A0A0B4J2B5 98 aa9.84□□□□□ -0.83
NUP54-213ENST00000513352 IGHV1-58A0A0C4DH39 117 aa9.84□□□□□ -0.83
NUP54-213ENST00000513352 APOMO95445 188 aa9.84□□□□□ -0.83
NUP54-213ENST00000513352 LINC00469Q8N7U9 141 aa9.84□□□□□ -0.83
NUP54-213ENST00000513352 C15orf56Q8N910 161 aa9.84□□□□□ -0.83
NUP54-213ENST00000513352 CHTOPQ9Y3Y2 248 aaKnown RBP9.84□□□□□ -0.83
NUP54-213ENST00000513352 DNAH10Q8IVF4 4471 aa9.83□□□□□ -0.84
NUP54-213ENST00000513352 TINCRA0A1B0GVN0 87 aa9.83□□□□□ -0.84
NUP54-213ENST00000513352 A0A1B0GVY2 172 aa9.83□□□□□ -0.84
NUP54-213ENST00000513352 CHAC1Q9BUX1 264 aa9.83□□□□□ -0.84
NUP54-213ENST00000513352 MAP1LC3CQ9BXW4 147 aa9.83□□□□□ -0.84
NUP54-213ENST00000513352 DNAH2Q9P225 4427 aa9.83□□□□□ -0.84
NUP54-213ENST00000513352 TRAV12-1A0A0B4J245 112 aa9.82□□□□□ -0.84
NUP54-213ENST00000513352 KRTAP10-2P60368 255 aa9.82□□□□□ -0.84
NUP54-213ENST00000513352 C4orf48Q5BLP8 95 aa9.82□□□□□ -0.84
NUP54-213ENST00000513352 FAM19A3Q7Z5A8 133 aa9.82□□□□□ -0.84
NUP54-213ENST00000513352 ORAOV1Q8WV07 137 aa9.82□□□□□ -0.84
NUP54-213ENST00000513352 PACRGQ96M98 296 aaPredicted RBP9.82□□□□□ -0.84
NUP54-213ENST00000513352 A0A087WZ39 114 aa9.81□□□□□ -0.84
NUP54-213ENST00000513352 IGLV5-52A0A0A0MRZ9 124 aa9.81□□□□□ -0.84
NUP54-213ENST00000513352 IGLC3P0DOY3 106 aa9.81□□□□□ -0.84
NUP54-213ENST00000513352 S100A2P29034 98 aa9.81□□□□□ -0.84
NUP54-213ENST00000513352 CDKN2A-AS1Q9UH64 79 aa9.81□□□□□ -0.84
NUP54-213ENST00000513352 IGLV4-69A0A075B6H9 119 aa9.8□□□□□ -0.84
NUP54-213ENST00000513352 ZNF561-AS1K7EIQ3 104 aa9.8□□□□□ -0.84
NUP54-213ENST00000513352 SPAG11BQ08648 103 aa9.8□□□□□ -0.84
NUP54-213ENST00000513352 NTN5Q8WTR8 489 aaPredicted RBP9.8□□□□□ -0.84
NUP54-213ENST00000513352 LINC00526Q96FQ7 95 aa9.8□□□□□ -0.84
NUP54-213ENST00000513352 PGPEP1Q9NXJ5 209 aa9.8□□□□□ -0.84
NUP54-213ENST00000513352 MRPL35Q9NZE8 188 aaKnown RBP9.8□□□□□ -0.84
NUP54-213ENST00000513352 DNAH17Q9UFH2 4485 aa9.79□□□□□ -0.84
NUP54-213ENST00000513352 GVQW2A0A096LPI5 108 aaPredicted RBP9.79□□□□□ -0.84
NUP54-213ENST00000513352 C11orf86A6NJI1 115 aa9.79□□□□□ -0.84
NUP54-213ENST00000513352 H3BRM9 83 aa9.79□□□□□ -0.84
NUP54-213ENST00000513352 TMEM170BQ5T4T1 132 aa9.79□□□□□ -0.84
NUP54-213ENST00000513352 HIST3H2BBQ8N257 126 aa9.79□□□□□ -0.84
NUP54-213ENST00000513352 TMA7Q9Y2S6 64 aaKnown RBP9.79□□□□□ -0.84
NUP54-213ENST00000513352 IGHV3-64A0A075B6Q5 118 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 C16orf90A8MZG2 172 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 F8VRH5 84 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 SPINK8P0C7L1 97 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 ZNF22P17026 224 aaPredicted RBP9.78□□□□□ -0.84
NUP54-213ENST00000513352 KRTDAPP60985 99 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 SNRPEP62304 92 aaKnown RBP9.78□□□□□ -0.84
NUP54-213ENST00000513352 ODF1Q14990 250 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 OR10D4PQ8NGN7 298 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 PMCHL2Q9BQD1 86 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 TOMM7Q9P0U1 55 aa9.78□□□□□ -0.84
NUP54-213ENST00000513352 PRSS2P07478 247 aa9.77□□□□□ -0.85
NUP54-213ENST00000513352 CDPF1Q6NVV7 123 aa9.77□□□□□ -0.85
NUP54-213ENST00000513352 LINC01561Q8N1V8 128 aa9.77□□□□□ -0.85
NUP54-213ENST00000513352 IGLV5-45A0A087WSX0 123 aa9.76□□□□□ -0.85
NUP54-213ENST00000513352 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.76□□□□□ -0.85
NUP54-213ENST00000513352 SYS1-DBNDD2H3BUS1 97 aa9.76□□□□□ -0.85
NUP54-213ENST00000513352 SMIM1B2RUZ4 78 aa9.75□□□□□ -0.85
NUP54-213ENST00000513352 C3orf79P0CE67 100 aa9.75□□□□□ -0.85
NUP54-213ENST00000513352 CAMK2N2Q96S95 79 aa9.75□□□□□ -0.85
NUP54-213ENST00000513352 FAT2Q9NYQ8 4349 aa9.74□□□□□ -0.85
NUP54-213ENST00000513352 DPM2O94777 84 aa9.74□□□□□ -0.85
NUP54-213ENST00000513352 PLNP26678 52 aa9.74□□□□□ -0.85
NUP54-213ENST00000513352 LINC01620Q4KN68 170 aa9.74□□□□□ -0.85
NUP54-213ENST00000513352 HIST1H2BLQ99880 126 aa9.74□□□□□ -0.85
NUP54-213ENST00000513352 IGKCP01834 107 aa9.73□□□□□ -0.85
NUP54-213ENST00000513352 GCSHP23434 173 aa9.73□□□□□ -0.85
NUP54-213ENST00000513352 CNBPP62633 177 aaKnown RBP9.73□□□□□ -0.85
NUP54-213ENST00000513352 SYCNQ0VAF6 134 aa9.73□□□□□ -0.85
NUP54-213ENST00000513352 PET117Q6UWS5 81 aa9.73□□□□□ -0.85
NUP54-213ENST00000513352 CARD19Q96LW7 228 aa9.73□□□□□ -0.85
NUP54-213ENST00000513352 C20orf202A1L168 122 aa9.72□□□□□ -0.85
NUP54-213ENST00000513352 C5orf52A6NGY3 159 aa9.72□□□□□ -0.85
NUP54-213ENST00000513352 SLPIP03973 132 aa9.72□□□□□ -0.85
NUP54-213ENST00000513352 CKS1BP61024 79 aa9.72□□□□□ -0.85
NUP54-213ENST00000513352 C6orf226Q5I0X4 101 aa9.72□□□□□ -0.85
NUP54-213ENST00000513352 C2orf48Q96LS8 159 aa9.72□□□□□ -0.85
NUP54-213ENST00000513352 NDUFA1O15239 70 aa9.71□□□□□ -0.86
NUP54-213ENST00000513352 Q6ZRU5 148 aa9.71□□□□□ -0.86
NUP54-213ENST00000513352 Q8IZM0 81 aa9.71□□□□□ -0.86
NUP54-213ENST00000513352 COX7B2Q8TF08 81 aa9.71□□□□□ -0.86
NUP54-213ENST00000513352 TMEM223A0PJW6 202 aa9.7□□□□□ -0.86
NUP54-213ENST00000513352 KIAA0087Q14695 138 aa9.7□□□□□ -0.86
NUP54-213ENST00000513352 LINC01545Q5VT33 79 aa9.7□□□□□ -0.86
NUP54-213ENST00000513352 C2orf82Q6UX34 121 aa9.7□□□□□ -0.86
NUP54-213ENST00000513352 HERVK_113P61574 105 aa9.69□□□□□ -0.86
NUP54-213ENST00000513352 UNQ6190/PRO20217Q6UXQ8 127 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms