RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 IGF2RP11717 2491 aa12.54□□□□□ -0.4
NUP54-205ENST00000507257 CSPG4Q6UVK1 2322 aa12.53□□□□□ -0.4
NUP54-205ENST00000507257 CCL18P55774 89 aa12.53□□□□□ -0.4
NUP54-205ENST00000507257 TMEM258P61165 79 aa12.53□□□□□ -0.4
NUP54-205ENST00000507257 C14orf132Q9NPU4 83 aa12.53□□□□□ -0.4
NUP54-205ENST00000507257 XCL2Q9UBD3 114 aa12.53□□□□□ -0.4
NUP54-205ENST00000507257 A0A096LNT2 108 aa12.52□□□□□ -0.4
NUP54-205ENST00000507257 LY6G6DO95868 133 aa12.52□□□□□ -0.4
NUP54-205ENST00000507257 LINC00846Q9NV44 126 aa12.52□□□□□ -0.4
NUP54-205ENST00000507257 ODF3L2Q3SX64 289 aa12.51□□□□□ -0.41
NUP54-205ENST00000507257 C9orf129Q5T035 196 aaKnown RBP12.51□□□□□ -0.41
NUP54-205ENST00000507257 Q6ZTI0 123 aa12.51□□□□□ -0.41
NUP54-205ENST00000507257 UPK3BQ9BT76 320 aa12.51□□□□□ -0.41
NUP54-205ENST00000507257 CREBBPQ92793 2442 aa12.51□□□□□ -0.41
NUP54-205ENST00000507257 IGHV3OR16-9A0A0B4J2B5 98 aa12.5□□□□□ -0.41
NUP54-205ENST00000507257 STHQ8IWL8 128 aa12.5□□□□□ -0.41
NUP54-205ENST00000507257 hADV29S1A0JD25 119 aa12.5□□□□□ -0.41
NUP54-205ENST00000507257 LINC00158P58513 81 aa12.5□□□□□ -0.41
NUP54-205ENST00000507257 LINC00167Q96N53 147 aa12.5□□□□□ -0.41
NUP54-205ENST00000507257 A0A087WZ39 114 aa12.49□□□□□ -0.41
NUP54-205ENST00000507257 TRBV6-4A0A1B0GX49 114 aa12.49□□□□□ -0.41
NUP54-205ENST00000507257 LOC107984640A0A0U1RRK4 108 aa12.49□□□□□ -0.41
NUP54-205ENST00000507257 LECT2O14960 151 aa12.49□□□□□ -0.41
NUP54-205ENST00000507257 C5orf47Q569G3 176 aa12.49□□□□□ -0.41
NUP54-205ENST00000507257 S100A7L2Q5SY68 101 aa12.49□□□□□ -0.41
NUP54-205ENST00000507257 VPS13CQ709C8 3753 aa12.48□□□□□ -0.41
NUP54-205ENST00000507257 FAM19A5Q7Z5A7 132 aaPredicted RBP12.48□□□□□ -0.41
NUP54-205ENST00000507257 ATP5EP2Q5VTU8 51 aa12.47□□□□□ -0.41
NUP54-205ENST00000507257 LINC01561Q8N1V8 128 aa12.47□□□□□ -0.41
NUP54-205ENST00000507257 ORMDL1Q9P0S3 153 aa12.47□□□□□ -0.41
NUP54-205ENST00000507257 IGKV3D-7A0A0C4DH55 119 aa12.47□□□□□ -0.41
NUP54-205ENST00000507257 CCKP06307 115 aa12.47□□□□□ -0.41
NUP54-205ENST00000507257 TOMM7Q9P0U1 55 aa12.47□□□□□ -0.41
NUP54-205ENST00000507257 USP17L23D6RBM5 183 aa12.45□□□□□ -0.42
NUP54-205ENST00000507257 JMJD7-PLA2G4BH0Y9G9 81 aa12.45□□□□□ -0.42
NUP54-205ENST00000507257 SS18Q15532 418 aa12.45□□□□□ -0.42
NUP54-205ENST00000507257 OR13C6PQ8NH95 151 aa12.45□□□□□ -0.42
NUP54-205ENST00000507257 SMIM9A6NGZ8 99 aa12.45□□□□□ -0.42
NUP54-205ENST00000507257 NCR3O14931 201 aa12.43□□□□□ -0.42
NUP54-205ENST00000507257 C16orf74Q96GX8 76 aa12.43□□□□□ -0.42
NUP54-205ENST00000507257 PAX4O43316 350 aa12.43□□□□□ -0.42
NUP54-205ENST00000507257 LYPD5Q6UWN5 251 aa12.43□□□□□ -0.42
NUP54-205ENST00000507257 NOP10Q9NPE3 64 aaKnown RBP12.43□□□□□ -0.42
NUP54-205ENST00000507257 TRBV6-8A0A0A6YYG3 113 aa12.42□□□□□ -0.42
NUP54-205ENST00000507257 A0A1W2PRX2 142 aa12.42□□□□□ -0.42
NUP54-205ENST00000507257 C11orf44Q8N8P7 122 aa12.42□□□□□ -0.42
NUP54-205ENST00000507257 DPH3Q96FX2 82 aa12.42□□□□□ -0.42
NUP54-205ENST00000507257 CYSTM1Q9H1C7 97 aa12.42□□□□□ -0.42
NUP54-205ENST00000507257 PLAC8L1A1L4L8 177 aa12.41□□□□□ -0.42
NUP54-205ENST00000507257 TRBV10-3A0A0K0K1G6 114 aa12.41□□□□□ -0.42
NUP54-205ENST00000507257 CMC4P56277 68 aaPredicted RBP12.41□□□□□ -0.42
NUP54-205ENST00000507257 COL12A1Q99715 3063 aa12.4□□□□□ -0.42
NUP54-205ENST00000507257 IGLV4-60A0A075B6I1 120 aa12.4□□□□□ -0.42
NUP54-205ENST00000507257 A0A087WVE0 104 aa12.39□□□□□ -0.43
NUP54-205ENST00000507257 NDUFC2-KCTD14E9PQ53 114 aa12.39□□□□□ -0.43
NUP54-205ENST00000507257 TMEM256-PLSCR3K7ERE1 68 aa12.38□□□□□ -0.43
NUP54-205ENST00000507257 PFN2P35080 140 aa12.38□□□□□ -0.43
NUP54-205ENST00000507257 TMEM86BQ8N661 226 aa12.38□□□□□ -0.43
NUP54-205ENST00000507257 TRGV2A0A075B6R0 118 aa12.37□□□□□ -0.43
NUP54-205ENST00000507257 LOC100131303A0A0U1RQF7 123 aa12.37□□□□□ -0.43
NUP54-205ENST00000507257 KHDC1LQ5JSQ8 128 aa12.37□□□□□ -0.43
NUP54-205ENST00000507257 Q8IZM0 81 aa12.37□□□□□ -0.43
NUP54-205ENST00000507257 NDUFC2O95298 119 aa12.37□□□□□ -0.43
NUP54-205ENST00000507257 GIG44P09565 113 aaPredicted RBP12.37□□□□□ -0.43
NUP54-205ENST00000507257 LINC00959A0A1B0GUT2 108 aa12.36□□□□□ -0.43
NUP54-205ENST00000507257 SLPIP03973 132 aa12.36□□□□□ -0.43
NUP54-205ENST00000507257 Q8N814 137 aa12.36□□□□□ -0.43
NUP54-205ENST00000507257 CRYBG3Q68DQ2 2970 aa12.36□□□□□ -0.43
NUP54-205ENST00000507257 IGHV4-31P0DP07 118 aa12.35□□□□□ -0.43
NUP54-205ENST00000507257 TRGV4A0A0C4DH28 118 aa12.35□□□□□ -0.43
NUP54-205ENST00000507257 BCE1O60756 84 aa12.35□□□□□ -0.43
NUP54-205ENST00000507257 NANOS2P60321 138 aaKnown RBP12.35□□□□□ -0.43
NUP54-205ENST00000507257 C6orf226Q5I0X4 101 aa12.35□□□□□ -0.43
NUP54-205ENST00000507257 SPG11Q96JI7 2443 aa12.35□□□□□ -0.43
NUP54-205ENST00000507257 WIPF1O43516 503 aa12.34□□□□□ -0.43
NUP54-205ENST00000507257 FHL2Q14192 279 aa12.34□□□□□ -0.43
NUP54-205ENST00000507257 IGKV3OR2-268A0A0C4DH90 116 aa12.33□□□□□ -0.44
NUP54-205ENST00000507257 A0A1B0GUV1 79 aa12.32□□□□□ -0.44
NUP54-205ENST00000507257 COX17Q14061 63 aa12.32□□□□□ -0.44
NUP54-205ENST00000507257 KIR2DL5BQ8NHK3 375 aa12.32□□□□□ -0.44
NUP54-205ENST00000507257 GHRHP01286 108 aa12.31□□□□□ -0.44
NUP54-205ENST00000507257 CSNK1G2-AS1Q8NCQ2 148 aa12.31□□□□□ -0.44
NUP54-205ENST00000507257 MAPK1IP1LQ8NDC0 245 aa12.29□□□□□ -0.44
NUP54-205ENST00000507257 CR1P17927 2039 aa12.29□□□□□ -0.44
NUP54-205ENST00000507257 UBL5Q9BZL1 73 aa12.29□□□□□ -0.44
NUP54-205ENST00000507257 DOPEY1Q5JWR5 2465 aa12.28□□□□□ -0.44
NUP54-205ENST00000507257 CCL24O00175 119 aa12.28□□□□□ -0.44
NUP54-205ENST00000507257 OXTP01178 125 aa12.27□□□□□ -0.44
NUP54-205ENST00000507257 DSCR8Q96T75 97 aa12.27□□□□□ -0.44
NUP54-205ENST00000507257 CELSR2Q9HCU4 2923 aa12.27□□□□□ -0.45
NUP54-205ENST00000507257 HILS1P60008 231 aa12.27□□□□□ -0.45
NUP54-205ENST00000507257 IGHV4-28A0A0C4DH34 117 aa12.26□□□□□ -0.45
NUP54-205ENST00000507257 LOC110117498A0A087WWA1 95 aa12.25□□□□□ -0.45
NUP54-205ENST00000507257 C19orf73Q9NVV2 129 aa12.25□□□□□ -0.45
NUP54-205ENST00000507257 ENHOQ6UWT2 76 aa12.24□□□□□ -0.45
NUP54-205ENST00000507257 LINC00612Q8N6U2 182 aa12.24□□□□□ -0.45
NUP54-205ENST00000507257 MUC7Q8TAX7 377 aa12.24□□□□□ -0.45
NUP54-205ENST00000507257 XCL1P47992 114 aa12.23□□□□□ -0.45
NUP54-205ENST00000507257 KIAA0087Q14695 138 aa12.23□□□□□ -0.45
NUP54-205ENST00000507257 FAM19A1Q7Z5A9 133 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 176.5 ms