RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 VSIG2Q96IQ7 327 aa7.14□□□□□ -1.27
HDAC3-214ENST00000495485 TRAV13-1A0A0B4J241 112 aa7.13□□□□□ -1.27
HDAC3-214ENST00000495485 TMEM238LA0A1B0GVL6 79 aa7.13□□□□□ -1.27
HDAC3-214ENST00000495485 A6NJY4 79 aa7.13□□□□□ -1.27
HDAC3-214ENST00000495485 PTTG1IPP53801 180 aa7.13□□□□□ -1.27
HDAC3-214ENST00000495485 SRSF9Q13242 221 aaKnown RBP eCLIP7.13□□□□□ -1.27
HDAC3-214ENST00000495485 FAM104AQ969W3 186 aa7.13□□□□□ -1.27
HDAC3-214ENST00000495485 STARD9Q9P2P6 4700 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 NUPR2A6NF83 97 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 TMEM238C9JI98 176 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 IGHV3-30-3P0DP02 117 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 GCSHP23434 173 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 LINC00242Q5T6M2 205 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 MAPKAPK5-AS1Q8N8E1 139 aa7.12□□□□□ -1.27
HDAC3-214ENST00000495485 PLECQ15149 4684 aaKnown RBP7.12□□□□□ -1.27
HDAC3-214ENST00000495485 LYSTQ99698 3801 aa7.11□□□□□ -1.27
HDAC3-214ENST00000495485 TRAV10A0A0B4J240 114 aa7.11□□□□□ -1.27
HDAC3-214ENST00000495485 CIRBPQ14011 172 aaKnown RBP7.11□□□□□ -1.27
HDAC3-214ENST00000495485 SFTA2Q6UW10 78 aa7.11□□□□□ -1.27
HDAC3-214ENST00000495485 CEND1Q8N111 149 aa7.11□□□□□ -1.27
HDAC3-214ENST00000495485 SPANXB1Q9NS25 103 aaPredicted RBP7.11□□□□□ -1.27
HDAC3-214ENST00000495485 KLK5Q9Y337 293 aaPredicted RBP7.11□□□□□ -1.27
HDAC3-214ENST00000495485 DEFB131BA0A096LNP1 70 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 A0A096LPF7 62 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 RBX1P62877 108 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 Q6ZVH6 145 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 C15orf53Q8NAA6 179 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 COPS9Q8WXC6 57 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 TM2D2Q9BX73 214 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 TTTY13Q9BZ97 58 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 CDKN2A-AS1Q9UH64 79 aa7.1□□□□□ -1.27
HDAC3-214ENST00000495485 IGLV4-60A0A075B6I1 120 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 ANGP03950 147 aaKnown RBP7.09□□□□□ -1.27
HDAC3-214ENST00000495485 SPINK8P0C7L1 97 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 SMIM13P0DJ93 91 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 HERV-K104P63124 156 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 Q6ZTC4 211 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 LINC01561Q8N1V8 128 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 NDUFA12Q9UI09 145 aa7.09□□□□□ -1.27
HDAC3-214ENST00000495485 IGHV3-64A0A075B6Q5 118 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 IGKV3OR2-268A0A0C4DH90 116 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 LINC00959A0A1B0GUT2 108 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 ZFAND6Q6FIF0 208 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 LYPD5Q6UWN5 251 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 TP73-AS1Q9UF72 201 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 DNAH1Q9P2D7 4330 aa7.08□□□□□ -1.28
HDAC3-214ENST00000495485 IGLV5-39A0A0G2JS06 123 aa7.07□□□□□ -1.28
HDAC3-214ENST00000495485 NDUFA1O15239 70 aa7.07□□□□□ -1.28
HDAC3-214ENST00000495485 TIMM17BO60830 172 aa7.07□□□□□ -1.28
HDAC3-214ENST00000495485 NANOS2P60321 138 aaKnown RBP7.07□□□□□ -1.28
HDAC3-214ENST00000495485 RPL24P83731 157 aaKnown RBP7.07□□□□□ -1.28
HDAC3-214ENST00000495485 CASC10Q5T4H9 136 aa7.07□□□□□ -1.28
HDAC3-214ENST00000495485 A0A087WZ39 114 aa7.06□□□□□ -1.28
HDAC3-214ENST00000495485 TRAV8-3A0A0A6YYJ7 113 aa7.06□□□□□ -1.28
HDAC3-214ENST00000495485 A0A1B0GV90 55 aa7.06□□□□□ -1.28
HDAC3-214ENST00000495485 SMIM1B2RUZ4 78 aa7.06□□□□□ -1.28
HDAC3-214ENST00000495485 COX6A2Q02221 97 aa7.06□□□□□ -1.28
HDAC3-214ENST00000495485 COX11Q9Y6N1 276 aa7.06□□□□□ -1.28
HDAC3-214ENST00000495485 ALMS1Q8TCU4 4167 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 TRAV8-4A0A0B4J246 113 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 CRPP02741 224 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 PRSS2P07478 247 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 IFITM1P13164 125 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 TSPEAR-AS2P59090 65 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 REG3AQ06141 175 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 CD164L2Q6UWJ8 174 aa7.05□□□□□ -1.28
HDAC3-214ENST00000495485 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.04□□□□□ -1.28
HDAC3-214ENST00000495485 IGHV3OR16-9A0A0B4J2B5 98 aa7.04□□□□□ -1.28
HDAC3-214ENST00000495485 A0A0J9YXY3 114 aa7.04□□□□□ -1.28
HDAC3-214ENST00000495485 APOMO95445 188 aa7.04□□□□□ -1.28
HDAC3-214ENST00000495485 LINC00269Q8N2A0 174 aa7.04□□□□□ -1.28
HDAC3-214ENST00000495485 COX7B2Q8TF08 81 aa7.04□□□□□ -1.28
HDAC3-214ENST00000495485 DNAH6Q9C0G6 4158 aa7.04□□□□□ -1.28
HDAC3-214ENST00000495485 MALP21145 153 aa7.03□□□□□ -1.28
HDAC3-214ENST00000495485 SPANXDQ9BXN6 97 aa7.03□□□□□ -1.28
HDAC3-214ENST00000495485 NHP2Q9NX24 153 aaKnown RBP7.03□□□□□ -1.28
HDAC3-214ENST00000495485 SPANXCQ9NY87 97 aa7.03□□□□□ -1.28
HDAC3-214ENST00000495485 VPS13DQ5THJ4 4388 aa7.03□□□□□ -1.28
HDAC3-214ENST00000495485 SACSQ9NZJ4 4579 aa7.03□□□□□ -1.28
HDAC3-214ENST00000495485 C9orf118A6NHY6 69 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 COX7A2LO14548 114 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 TAX1BP3O14907 124 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 CXCL5P42830 114 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 XCL1P47992 114 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 FXYD2P54710 66 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 CCL18P55774 89 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 C6orf226Q5I0X4 101 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 MEIG1Q5JSS6 88 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 Q9H8V8 135 aa7.02□□□□□ -1.29
HDAC3-214ENST00000495485 KMT2CQ8NEZ4 4911 aaKnown RBP7.02□□□□□ -1.29
HDAC3-214ENST00000495485 IGHV3-30P01768 117 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 IGHV3-30-5P0DP03 117 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 VAMP3Q15836 100 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 MIAQ16674 131 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 LYRM7Q5U5X0 104 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 CFAP161Q6P656 301 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 C5orf38Q86SI9 138 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 Q8IZM0 81 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 C10orf126Q8N4M7 172 aa7.01□□□□□ -1.29
HDAC3-214ENST00000495485 CHCHD10Q8WYQ3 142 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms