RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 A0A0U1RRA0 63 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 TIRAPP58753 221 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 NPC2P61916 151 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 HERVK_113P63121 156 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 NDUFA12Q9UI09 145 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 LYSTQ99698 3801 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 IGLV10-54A0A075B6I4 117 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 IGLV5-45A0A087WSX0 123 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 SMIM1B2RUZ4 78 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 XCL1P47992 114 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 SEC11AP67812 179 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 MRPL23Q16540 153 aaKnown RBP4.29□□□□□ -1.72
CLK1-210ENST00000473565 C5orf38Q86SI9 138 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 ICOSQ9Y6W8 199 aa4.29□□□□□ -1.72
CLK1-210ENST00000473565 MEGF8Q7Z7M0 2845 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 A0A0J9YXY3 114 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 A6NDN8 102 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 H7C423 109 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 KPRPQ5T749 579 aaPredicted RBP4.28□□□□□ -1.72
CLK1-210ENST00000473565 LINC00269Q8N2A0 174 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 DAND5Q8N907 189 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 TM2D2Q9BX73 214 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 H3BRM9 83 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 ADAMTSL4-AS1Q5T5F5 129 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 C11orf45Q8TAV5 145 aa4.28□□□□□ -1.72
CLK1-210ENST00000473565 LINC00959A0A1B0GUT2 108 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 H3BUT2 72 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 ANGP03950 147 aaKnown RBP4.27□□□□□ -1.73
CLK1-210ENST00000473565 SMAGPQ0VAQ4 97 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 C11orf68Q9H3H3 251 aaKnown RBP4.27□□□□□ -1.73
CLK1-210ENST00000473565 TOMM7Q9P0U1 55 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 PRKDCP78527 4128 aaKnown RBP4.27□□□□□ -1.73
CLK1-210ENST00000473565 IGLV5-39A0A0G2JS06 123 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 CCL25O15444 150 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 VAMP3Q15836 100 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 Q9H8V8 135 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 DEFB131BA0A096LNP1 70 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 EIF4EBP3O60516 100 aaPredicted RBP4.27□□□□□ -1.73
CLK1-210ENST00000473565 APOMO95445 188 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 IGHV3-30P01768 117 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 IGHV3-33P01772 117 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 IGHV3-30-5P0DP03 117 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 LYPD5Q6UWN5 251 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 FAM19A3Q7Z5A8 133 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 WFDC10BQ8IUB3 73 aa4.27□□□□□ -1.73
CLK1-210ENST00000473565 IGHV3OR16-9A0A0B4J2B5 98 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 SMIM13P0DJ93 91 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 TAL2Q16559 108 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 ZFAND6Q6FIF0 208 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 SFTA2Q6UW10 78 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 LITAFQ99732 161 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 SPATA25Q9BR10 227 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 TM2D3Q9BRN9 247 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 A0A1B0GUV1 79 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 TEX48A0A1B0GUV7 120 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 PRSS2P07478 247 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 MUSTN1Q8IVN3 82 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 KLK12Q9UKR0 248 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 CSMD3Q7Z407 3707 aa4.26□□□□□ -1.73
CLK1-210ENST00000473565 LELP1Q5T871 98 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 C9orf118A6NHY6 69 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 REG3AQ06141 175 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 ESRGQ1W209 222 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 LURAP1LQ8IV03 231 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 A4D1N5 150 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 NDUFA1O15239 70 aa4.25□□□□□ -1.73
CLK1-210ENST00000473565 SPANXB1Q9NS25 103 aaPredicted RBP4.25□□□□□ -1.73
CLK1-210ENST00000473565 SS18Q15532 418 aa4.24□□□□□ -1.73
CLK1-210ENST00000473565 TMEM238C9JI98 176 aa4.24□□□□□ -1.73
CLK1-210ENST00000473565 COX7B2Q8TF08 81 aa4.24□□□□□ -1.73
CLK1-210ENST00000473565 CHCHD10Q8WYQ3 142 aaPredicted RBP4.24□□□□□ -1.73
CLK1-210ENST00000473565 A0A087WZ39 114 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 IGLL5B9A064 214 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 H7C2G1 150 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 CFC1BP0CG36 223 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 CFC1P0CG37 223 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 MEIG1Q5JSS6 88 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 LINC00526Q96FQ7 95 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 C2orf82Q6UX34 121 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 PGPEP1Q9NXJ5 209 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 DNAH7Q8WXX0 4024 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 A0A1W2PPM0 123 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 UBE2V1Q13404 147 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 ENHOQ6UWT2 76 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 UBE2WQ96B02 151 aa4.23□□□□□ -1.73
CLK1-210ENST00000473565 A0A1B0GWB2 263 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 PLECQ15149 4684 aaKnown RBP4.22□□□□□ -1.73
CLK1-210ENST00000473565 MIAQ16674 131 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 SOSTDC1Q6X4U4 206 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 SH2D6Q7Z4S9 175 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 TMEM238LA0A1B0GVL6 79 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 GAGE12HA6NDE8 117 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 A6NJY4 79 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 TGP01266 2768 aa4.22□□□□□ -1.73
CLK1-210ENST00000473565 TSPAN13O95857 204 aa4.21□□□□□ -1.73
CLK1-210ENST00000473565 PFN2P35080 140 aa4.21□□□□□ -1.73
CLK1-210ENST00000473565 SPCS1Q9Y6A9 102 aa4.21□□□□□ -1.73
CLK1-210ENST00000473565 DNAH10Q8IVF4 4471 aa4.21□□□□□ -1.73
CLK1-210ENST00000473565 TRAV10A0A0B4J240 114 aa4.21□□□□□ -1.74
CLK1-210ENST00000473565 GAGE10A6NGK3 116 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms