RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 VSTM2AQ8TAG5 236 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TMEM263Q8WUH6 116 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TCEAL4Q96EI5 215 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 AP1S3Q96PC3 154 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 MGST2Q99735 147 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 SEC11CQ9BY50 192 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 GID8Q9NWU2 228 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 COA4Q9NYJ1 87 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 SSR3Q9UNL2 185 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 ACACBO00763 2458 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 PKD1L2Q7Z442 2459 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 LRRC37A3O60309 1634 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TARBP1Q13395 1621 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 BPTFQ12830 3046 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 CDK5RAP2Q96SN8 1893 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 CUX1P39880 1505 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 ASXL1Q8IXJ9 1541 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 NINQ8N4C6 2090 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 CDC42BPAQ5VT25 1732 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 KNDC1Q76NI1 1749 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 XRN1Q8IZH2 1706 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 MYH13Q9UKX3 1938 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 RGPD2P0DJD1 1756 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 YTHDC2Q9H6S0 1430 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 RAPGEF6Q8TEU7 1601 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 DOCK2Q92608 1830 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 A0A1B0GX51 115 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 MCRIP1C9JLW8 97 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 J3QLW9 94 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 UQCR11O14957 56 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 NPFFO15130 113 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 SPINK4O60575 86 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 ATG12O94817 140 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 RPP14O95059 124 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 NDUFC2O95298 119 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 SFT2D2O95562 160 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 TNFP01375 233 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 IFNA14P01570 189 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 IFNA4P05014 189 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 PAEPP09466 180 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 CBLN1P23435 193 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 CASQ1P31415 396 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 UBE2D3P61077 147 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 UBE2D2P62837 147 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 DCDP81605 110 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 MYL5Q02045 173 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 PIGYQ3MUY2 71 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 MORN2Q502X0 79 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 TMEM170BQ5T4T1 132 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 NCBP2-AS2Q69YL0 99 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 MRPL54Q6P161 138 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 BAGE2Q86Y30 109 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 DEFB107AQ8IZN7 70 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 TTC9CQ8N5M4 171 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 DYDC1Q8WWB3 177 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 AP3S1Q92572 193 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 CEP19Q96LK0 163 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 LXNQ9BS40 222 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 SPANXDQ9BXN6 97 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 DPH3P1Q9H4G8 78 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 FAM96AQ9H5X1 160 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 POLA1P09884 1462 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 DOT1LQ8TEK3 1739 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 EHBP1L1Q8N3D4 1523 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 UTP20O75691 2785 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 SPG11Q96JI7 2443 aa-0.7□□□□□ -2.52
SCN1A-205ENST00000473295 CCDC168Q8NDH2 2452 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 ALKQ9UM73 1620 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 ABCC5O15440 1437 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 CPSF1Q10570 1443 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PPIP5K1Q6PFW1 1433 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 FRYQ5TBA9 3013 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 MAGI2Q86UL8 1455 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 MRC2Q9UBG0 1479 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 TRAV2A0A0B4J234 112 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 TRAV13-2A0A0B4J235 113 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 ERICH2A1L162 156 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 FAM92AA1XBS5 289 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 C9orf92A6NGG3 77 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 C5orf58C9J3I9 102 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 CHKB-CPT1BH3BT56 60 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 DEFB4AO15263 64 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 E2F6O75461 281 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 ATP5HO75947 161 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 IFNA21P01568 189 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 FABP1P07148 127 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 SERPINB1P30740 379 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 UBA52P62987 128 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PSPHP78330 225 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PRLHP81277 87 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 REEP5Q00765 189 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 RGS21Q2M5E4 152 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 CCDC122Q5T0U0 273 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 OR13C6PQ8NH95 151 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 MCEEQ96PE7 176 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PBDC1Q9BVG4 233 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PCBD2Q9H0N5 130 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PSENENQ9NZ42 101 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 LAMTOR2Q9Y2Q5 125 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 LENEPQ9Y5L5 61 aa-0.71□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms