RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SPINK8P0C7L1 97 aa9.78□□□□□ -0.84
USP39-207ENST00000450066 LINC00959A0A1B0GUT2 108 aa9.77□□□□□ -0.85
USP39-207ENST00000450066 HSD52Q0P140 79 aa9.77□□□□□ -0.85
USP39-207ENST00000450066 CCL25O15444 150 aa9.76□□□□□ -0.85
USP39-207ENST00000450066 BVES-AS1Q5T3Y7 98 aa9.76□□□□□ -0.85
USP39-207ENST00000450066 IGLV5-39A0A0G2JS06 123 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 ANGP03950 147 aaKnown RBP9.75□□□□□ -0.85
USP39-207ENST00000450066 SCGB1D4Q6XE38 83 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 LINC00269Q8N2A0 174 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 Q8N3U1 123 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 C15orf53Q8NAA6 179 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 SMIM1B2RUZ4 78 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 NHLRC4P0CG21 123 aaPredicted RBP9.75□□□□□ -0.85
USP39-207ENST00000450066 SS18Q15532 418 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 ESRGQ1W209 222 aa9.75□□□□□ -0.85
USP39-207ENST00000450066 IGHV3OR16-9A0A0B4J2B5 98 aa9.74□□□□□ -0.85
USP39-207ENST00000450066 COL5A1-AS1Q5SY13 56 aa9.74□□□□□ -0.85
USP39-207ENST00000450066 REG3AQ06141 175 aa9.73□□□□□ -0.85
USP39-207ENST00000450066 TAL2Q16559 108 aa9.73□□□□□ -0.85
USP39-207ENST00000450066 ZFAND6Q6FIF0 208 aa9.73□□□□□ -0.85
USP39-207ENST00000450066 CLPSL2Q6UWE3 100 aa9.73□□□□□ -0.85
USP39-207ENST00000450066 A0A087WZ39 114 aa9.71□□□□□ -0.85
USP39-207ENST00000450066 WFDC10BQ8IUB3 73 aa9.71□□□□□ -0.85
USP39-207ENST00000450066 HIST1H4GQ99525 98 aa9.71□□□□□ -0.85
USP39-207ENST00000450066 PRR34Q9NV39 138 aa9.71□□□□□ -0.85
USP39-207ENST00000450066 NDUFA12Q9UI09 145 aa9.71□□□□□ -0.85
USP39-207ENST00000450066 PRKDCP78527 4128 aaKnown RBP9.71□□□□□ -0.85
USP39-207ENST00000450066 C10orf126Q8N4M7 172 aa9.71□□□□□ -0.86
USP39-207ENST00000450066 XCL1P47992 114 aa9.7□□□□□ -0.86
USP39-207ENST00000450066 ORAOV1Q8WV07 137 aa9.7□□□□□ -0.86
USP39-207ENST00000450066 TM2D2Q9BX73 214 aa9.7□□□□□ -0.86
USP39-207ENST00000450066 CEND1Q8N111 149 aa9.7□□□□□ -0.86
USP39-207ENST00000450066 KLK12Q9UKR0 248 aa9.7□□□□□ -0.86
USP39-207ENST00000450066 A0A0J9YXY3 114 aa9.69□□□□□ -0.86
USP39-207ENST00000450066 NDUFA1O15239 70 aa9.69□□□□□ -0.86
USP39-207ENST00000450066 GCSHP23434 173 aa9.69□□□□□ -0.86
USP39-207ENST00000450066 CD164L2Q6UWJ8 174 aa9.69□□□□□ -0.86
USP39-207ENST00000450066 CHCHD10Q8WYQ3 142 aaPredicted RBP9.69□□□□□ -0.86
USP39-207ENST00000450066 SPANXB1Q9NS25 103 aaPredicted RBP9.69□□□□□ -0.86
USP39-207ENST00000450066 IGLL5B9A064 214 aa9.68□□□□□ -0.86
USP39-207ENST00000450066 IGHV3-30P01768 117 aa9.68□□□□□ -0.86
USP39-207ENST00000450066 IGHV3-33P01772 117 aa9.68□□□□□ -0.86
USP39-207ENST00000450066 IGHV3-30-5P0DP03 117 aa9.68□□□□□ -0.86
USP39-207ENST00000450066 C5orf38Q86SI9 138 aa9.68□□□□□ -0.86
USP39-207ENST00000450066 SRSF9Q13242 221 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP39-207ENST00000450066 LINC01561Q8N1V8 128 aa9.68□□□□□ -0.86
USP39-207ENST00000450066 ENHOQ6UWT2 76 aa9.67□□□□□ -0.86
USP39-207ENST00000450066 A6NDN8 102 aa9.67□□□□□ -0.86
USP39-207ENST00000450066 FXYD2P54710 66 aa9.67□□□□□ -0.86
USP39-207ENST00000450066 LINC01556Q5JQF7 62 aa9.67□□□□□ -0.86
USP39-207ENST00000450066 IGLV10-54A0A075B6I4 117 aa9.66□□□□□ -0.86
USP39-207ENST00000450066 TMEM238C9JI98 176 aa9.66□□□□□ -0.86
USP39-207ENST00000450066 COX7B2Q8TF08 81 aa9.66□□□□□ -0.86
USP39-207ENST00000450066 ZNF625Q96I27 306 aaPredicted RBP9.66□□□□□ -0.86
USP39-207ENST00000450066 Q9H8V8 135 aa9.66□□□□□ -0.86
USP39-207ENST00000450066 COX7A2LO14548 114 aa9.65□□□□□ -0.86
USP39-207ENST00000450066 CRPP02741 224 aa9.65□□□□□ -0.86
USP39-207ENST00000450066 PTTG1IPP53801 180 aa9.65□□□□□ -0.86
USP39-207ENST00000450066 CCL18P55774 89 aa9.65□□□□□ -0.86
USP39-207ENST00000450066 TRAV8-4A0A0B4J246 113 aa9.65□□□□□ -0.87
USP39-207ENST00000450066 LINC00588Q9Y4M8 146 aa9.65□□□□□ -0.87
USP39-207ENST00000450066 DYNC2H1Q8NCM8 4307 aaKnown RBP9.64□□□□□ -0.87
USP39-207ENST00000450066 K7EP13 123 aa9.64□□□□□ -0.87
USP39-207ENST00000450066 TIMM17BO60830 172 aa9.64□□□□□ -0.87
USP39-207ENST00000450066 DNAH10OSP0CZ25 163 aa9.64□□□□□ -0.87
USP39-207ENST00000450066 FOXI1Q12951 378 aa9.64□□□□□ -0.87
USP39-207ENST00000450066 UBE2WQ96B02 151 aa9.64□□□□□ -0.87
USP39-207ENST00000450066 LITAFQ99732 161 aa9.64□□□□□ -0.87
USP39-207ENST00000450066 A0A1B0GV90 55 aa9.63□□□□□ -0.87
USP39-207ENST00000450066 HERV-K104P63124 156 aa9.63□□□□□ -0.87
USP39-207ENST00000450066 MIAQ16674 131 aa9.63□□□□□ -0.87
USP39-207ENST00000450066 TOMM7Q9P0U1 55 aa9.63□□□□□ -0.87
USP39-207ENST00000450066 CSMD3Q7Z407 3707 aa9.62□□□□□ -0.87
USP39-207ENST00000450066 GAGE12HA6NDE8 117 aa9.62□□□□□ -0.87
USP39-207ENST00000450066 TAX1BP3O14907 124 aa9.62□□□□□ -0.87
USP39-207ENST00000450066 MALP21145 153 aa9.62□□□□□ -0.87
USP39-207ENST00000450066 CIRBPQ14011 172 aaKnown RBP9.62□□□□□ -0.87
USP39-207ENST00000450066 Q6ZVH6 145 aa9.62□□□□□ -0.87
USP39-207ENST00000450066 DNAH7Q8WXX0 4024 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 TMEM238LA0A1B0GVL6 79 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 A6NJY4 79 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 ADAMTSL4-AS1Q5T5F5 129 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 SFTA2Q6UW10 78 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 Q8IZM0 81 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 UPK3BQ9BT76 320 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 SPANXDQ9BXN6 97 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 SPANXCQ9NY87 97 aa9.61□□□□□ -0.87
USP39-207ENST00000450066 SMIM13P0DJ93 91 aa9.6□□□□□ -0.87
USP39-207ENST00000450066 C6orf226Q5I0X4 101 aa9.6□□□□□ -0.87
USP39-207ENST00000450066 NHP2Q9NX24 153 aaKnown RBP9.6□□□□□ -0.87
USP39-207ENST00000450066 PRSS2P07478 247 aa9.6□□□□□ -0.87
USP39-207ENST00000450066 COX11Q9Y6N1 276 aa9.59□□□□□ -0.87
USP39-207ENST00000450066 A0A1B0GWB2 263 aa9.59□□□□□ -0.87
USP39-207ENST00000450066 MUSTN1Q8IVN3 82 aa9.59□□□□□ -0.87
USP39-207ENST00000450066 APLNQ9ULZ1 77 aa9.59□□□□□ -0.87
USP39-207ENST00000450066 APOMO95445 188 aa9.58□□□□□ -0.88
USP39-207ENST00000450066 KIAA0087Q14695 138 aa9.58□□□□□ -0.88
USP39-207ENST00000450066 KLK5Q9Y337 293 aaPredicted RBP9.58□□□□□ -0.88
USP39-207ENST00000450066 NUPR2A6NF83 97 aa9.57□□□□□ -0.88
USP39-207ENST00000450066 RPL24P83731 157 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms