RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 M0QXV9 152 aa13.17□□□□□ -0.3
CLK1-205ENST00000434813 H7C423 109 aa13.16□□□□□ -0.3
CLK1-205ENST00000434813 UBE2L6O14933 153 aa13.16□□□□□ -0.3
CLK1-205ENST00000434813 PF4P02776 101 aa13.16□□□□□ -0.3
CLK1-205ENST00000434813 KRTAP10-3P60369 221 aa13.16□□□□□ -0.3
CLK1-205ENST00000434813 JMJD1CQ15652 2540 aa13.16□□□□□ -0.3
CLK1-205ENST00000434813 FN1P02751 2386 aaKnown RBP13.16□□□□□ -0.3
CLK1-205ENST00000434813 PPDPFLQ8WWR9 84 aa13.15□□□□□ -0.3
CLK1-205ENST00000434813 Q9H8V8 135 aa13.15□□□□□ -0.3
CLK1-205ENST00000434813 NIPBLQ6KC79 2804 aaeCLIP13.15□□□□□ -0.3
CLK1-205ENST00000434813 TRIAP1O43715 76 aa13.15□□□□□ -0.3
CLK1-205ENST00000434813 CIRBPQ14011 172 aaKnown RBP13.15□□□□□ -0.3
CLK1-205ENST00000434813 TRGV4A0A0C4DH28 118 aa13.14□□□□□ -0.31
CLK1-205ENST00000434813 LOC100131303A0A0U1RQF7 123 aa13.14□□□□□ -0.31
CLK1-205ENST00000434813 F5H768 121 aa13.14□□□□□ -0.31
CLK1-205ENST00000434813 NPC2P61916 151 aa13.14□□□□□ -0.31
CLK1-205ENST00000434813 ATXN8Q156A1 80 aa13.14□□□□□ -0.31
CLK1-205ENST00000434813 SLC25A20O43772 301 aa13.13□□□□□ -0.31
CLK1-205ENST00000434813 SIGMAR1Q99720 223 aa13.13□□□□□ -0.31
CLK1-205ENST00000434813 LINC00482Q8N8I6 264 aa13.13□□□□□ -0.31
CLK1-205ENST00000434813 ICOSQ9Y6W8 199 aa13.13□□□□□ -0.31
CLK1-205ENST00000434813 C9JAW5 83 aa13.12□□□□□ -0.31
CLK1-205ENST00000434813 FHL2Q14192 279 aa13.12□□□□□ -0.31
CLK1-205ENST00000434813 CARD19Q96LW7 228 aa13.12□□□□□ -0.31
CLK1-205ENST00000434813 ANKRD29Q8N6D5 301 aa13.12□□□□□ -0.31
CLK1-205ENST00000434813 DAND5Q8N907 189 aa13.12□□□□□ -0.31
CLK1-205ENST00000434813 ZNF625Q96I27 306 aaPredicted RBP13.12□□□□□ -0.31
CLK1-205ENST00000434813 C2CD3Q4AC94 2353 aa13.1□□□□□ -0.31
CLK1-205ENST00000434813 NOTCH3Q9UM47 2321 aa13.1□□□□□ -0.31
CLK1-205ENST00000434813 LINC01620Q4KN68 170 aa13.1□□□□□ -0.31
CLK1-205ENST00000434813 LINC00308Q8TCZ7 52 aa13.1□□□□□ -0.31
CLK1-205ENST00000434813 LINC01600Q96MT4 127 aa13.1□□□□□ -0.31
CLK1-205ENST00000434813 TRBV6-8A0A0A6YYG3 113 aa13.08□□□□□ -0.31
CLK1-205ENST00000434813 SCGB1A1P11684 91 aa13.08□□□□□ -0.31
CLK1-205ENST00000434813 HERV-K104P63124 156 aa13.08□□□□□ -0.31
CLK1-205ENST00000434813 COPS9Q8WXC6 57 aa13.08□□□□□ -0.31
CLK1-205ENST00000434813 RPL13AP40429 203 aaKnown RBP13.08□□□□□ -0.32
CLK1-205ENST00000434813 PRIMA1Q86XR5 153 aa13.08□□□□□ -0.32
CLK1-205ENST00000434813 LINC00612Q8N6U2 182 aa13.08□□□□□ -0.32
CLK1-205ENST00000434813 KIR2DL5BQ8NHK3 375 aa13.08□□□□□ -0.32
CLK1-205ENST00000434813 COX6CP09669 75 aa13.07□□□□□ -0.32
CLK1-205ENST00000434813 GAGE6Q13070 117 aa13.06□□□□□ -0.32
CLK1-205ENST00000434813 TRBV10-2A0A0K0K1G8 114 aa13.05□□□□□ -0.32
CLK1-205ENST00000434813 CDIP1Q9H305 208 aa13.05□□□□□ -0.32
CLK1-205ENST00000434813 MEIG1Q5JSS6 88 aa13.05□□□□□ -0.32
CLK1-205ENST00000434813 PPDPFQ9H3Y8 114 aa13.05□□□□□ -0.32
CLK1-205ENST00000434813 SOSTDC1Q6X4U4 206 aa13.03□□□□□ -0.32
CLK1-205ENST00000434813 IGLV4-60A0A075B6I1 120 aa13.03□□□□□ -0.32
CLK1-205ENST00000434813 DEFB130BP0DP73 79 aa13.03□□□□□ -0.32
CLK1-205ENST00000434813 DEFB130AP0DP74 79 aa13.03□□□□□ -0.32
CLK1-205ENST00000434813 CHCHD5Q9BSY4 110 aa13.03□□□□□ -0.32
CLK1-205ENST00000434813 X6R8D5 127 aa13.03□□□□□ -0.32
CLK1-205ENST00000434813 A0A0U1RRA0 63 aa13.02□□□□□ -0.33
CLK1-205ENST00000434813 CITED1Q99966 193 aa13.02□□□□□ -0.33
CLK1-205ENST00000434813 LST1O00453 97 aa13.01□□□□□ -0.33
CLK1-205ENST00000434813 SMIM9A6NGZ8 99 aa13.01□□□□□ -0.33
CLK1-205ENST00000434813 COX7B2Q8TF08 81 aa13.01□□□□□ -0.33
CLK1-205ENST00000434813 CLEC2BQ92478 149 aa13□□□□□ -0.33
CLK1-205ENST00000434813 IGHV3OR16-9A0A0B4J2B5 98 aa12.99□□□□□ -0.33
CLK1-205ENST00000434813 H3BT86 120 aa12.99□□□□□ -0.33
CLK1-205ENST00000434813 C9orf66Q5T8R8 295 aa12.99□□□□□ -0.33
CLK1-205ENST00000434813 NTN5Q8WTR8 489 aaPredicted RBP12.99□□□□□ -0.33
CLK1-205ENST00000434813 IGKV3OR2-268A0A0C4DH90 116 aa12.98□□□□□ -0.33
CLK1-205ENST00000434813 GYPEP15421 78 aa12.97□□□□□ -0.33
CLK1-205ENST00000434813 TMEM262E9PQX1 116 aa12.96□□□□□ -0.33
CLK1-205ENST00000434813 SHISA2Q6UWI4 295 aa12.96□□□□□ -0.33
CLK1-205ENST00000434813 C2orf82Q6UX34 121 aa12.96□□□□□ -0.33
CLK1-205ENST00000434813 TENM1Q9UKZ4 2725 aa12.96□□□□□ -0.33
CLK1-205ENST00000434813 A0A087WZ39 114 aa12.96□□□□□ -0.34
CLK1-205ENST00000434813 SPATA3Q8NHX4 192 aa12.96□□□□□ -0.34
CLK1-205ENST00000434813 PRO0255Q9UI72 69 aa12.96□□□□□ -0.34
CLK1-205ENST00000434813 COX7A2LO14548 114 aa12.95□□□□□ -0.34
CLK1-205ENST00000434813 XGP55808 180 aa12.95□□□□□ -0.34
CLK1-205ENST00000434813 UBE2WQ96B02 151 aa12.95□□□□□ -0.34
CLK1-205ENST00000434813 LYRM9A8MSI8 78 aa12.94□□□□□ -0.34
CLK1-205ENST00000434813 TOMM7Q9P0U1 55 aa12.94□□□□□ -0.34
CLK1-205ENST00000434813 TEX49A0A1B0GTD5 131 aa12.93□□□□□ -0.34
CLK1-205ENST00000434813 LINC00959A0A1B0GUT2 108 aa12.93□□□□□ -0.34
CLK1-205ENST00000434813 ATRQ13535 2644 aa12.93□□□□□ -0.34
CLK1-205ENST00000434813 VWFP04275 2813 aa12.93□□□□□ -0.34
CLK1-205ENST00000434813 A0A1B0GUV1 79 aa12.93□□□□□ -0.34
CLK1-205ENST00000434813 FAM222AQ5U5X8 452 aa12.93□□□□□ -0.34
CLK1-205ENST00000434813 MT-ATP8P03928 68 aa12.92□□□□□ -0.34
CLK1-205ENST00000434813 MIR7-3HGQ8N6C7 128 aa12.91□□□□□ -0.34
CLK1-205ENST00000434813 IBA57-AS1B1ANH7 110 aa12.89□□□□□ -0.35
CLK1-205ENST00000434813 C5orf38Q86SI9 138 aa12.89□□□□□ -0.35
CLK1-205ENST00000434813 TRAV13-2A0A0B4J235 113 aa12.89□□□□□ -0.35
CLK1-205ENST00000434813 APOC4P55056 127 aa12.89□□□□□ -0.35
CLK1-205ENST00000434813 DEFB135Q30KP9 77 aa12.89□□□□□ -0.35
CLK1-205ENST00000434813 PAX4O43316 350 aa12.88□□□□□ -0.35
CLK1-205ENST00000434813 CRPP02741 224 aa12.88□□□□□ -0.35
CLK1-205ENST00000434813 LINC00158P58513 81 aa12.87□□□□□ -0.35
CLK1-205ENST00000434813 SS18Q15532 418 aa12.87□□□□□ -0.35
CLK1-205ENST00000434813 SND1-IT1Q9HBX3 110 aa12.87□□□□□ -0.35
CLK1-205ENST00000434813 KRTAP24-1Q3LI83 254 aa12.86□□□□□ -0.35
CLK1-205ENST00000434813 TRAV8-4A0A0B4J246 113 aa12.86□□□□□ -0.35
CLK1-205ENST00000434813 DEFB121Q5J5C9 76 aa12.86□□□□□ -0.35
CLK1-205ENST00000434813 WFDC9Q8NEX5 89 aa12.86□□□□□ -0.35
CLK1-205ENST00000434813 IGKV2-28A0A075B6P5 120 aa12.85□□□□□ -0.35
CLK1-205ENST00000434813 IGHV4-28A0A0C4DH34 117 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms