RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TEX29Q8N6K0 151 aa8.39□□□□□ -1.07
CD44-209ENST00000433892 PLAC8L1A1L4L8 177 aa8.38□□□□□ -1.07
CD44-209ENST00000433892 FAM19A3Q7Z5A8 133 aa8.38□□□□□ -1.07
CD44-209ENST00000433892 PRIMA1Q86XR5 153 aa8.38□□□□□ -1.07
CD44-209ENST00000433892 UBE2L6O14933 153 aa8.38□□□□□ -1.07
CD44-209ENST00000433892 F5H768 121 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 LST1O00453 97 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 MEIG1Q5JSS6 88 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 SOSTDC1Q6X4U4 206 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 LINC01600Q96MT4 127 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 TMEM243Q9BU79 118 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 NBEAL2Q6ZNJ1 2754 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 UBE2WQ96B02 151 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 C16orf74Q96GX8 76 aa8.37□□□□□ -1.07
CD44-209ENST00000433892 GCN1Q92616 2671 aaKnown RBP8.37□□□□□ -1.07
CD44-209ENST00000433892 C19orf73Q9NVV2 129 aa8.36□□□□□ -1.07
CD44-209ENST00000433892 IGLV1-51P01701 117 aa8.35□□□□□ -1.07
CD44-209ENST00000433892 TRGV4A0A0C4DH28 118 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 IGKV3OR2-268A0A0C4DH90 116 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 H3BT86 120 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 CMC4P56277 68 aaPredicted RBP8.34□□□□□ -1.07
CD44-209ENST00000433892 KRTAP1-1Q07627 177 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 CSNK1G2-AS1Q8NCQ2 148 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 TRAV8-4A0A0B4J246 113 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 TRBV6-4A0A1B0GX49 114 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 GAGE6Q13070 117 aa8.34□□□□□ -1.07
CD44-209ENST00000433892 FN1P02751 2386 aaKnown RBP8.33□□□□□ -1.08
CD44-209ENST00000433892 RNASE1P07998 156 aaKnown RBP8.33□□□□□ -1.08
CD44-209ENST00000433892 C16orf95Q9H693 158 aa8.33□□□□□ -1.08
CD44-209ENST00000433892 VWFP04275 2813 aa8.33□□□□□ -1.08
CD44-209ENST00000433892 CRLF1O75462 422 aa8.33□□□□□ -1.08
CD44-209ENST00000433892 HERV-K104P63124 156 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 COPS9Q8WXC6 57 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 CITED1Q99966 193 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 OVOL2Q9BRP0 275 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 IGLV4-60A0A075B6I1 120 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 SNCGO76070 127 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 TOMM7Q9P0U1 55 aa8.32□□□□□ -1.08
CD44-209ENST00000433892 HELZ2Q9BYK8 2649 aaKnown RBP8.32□□□□□ -1.08
CD44-209ENST00000433892 FHL2Q14192 279 aa8.31□□□□□ -1.08
CD44-209ENST00000433892 FAM110AQ9BQ89 295 aa8.31□□□□□ -1.08
CD44-209ENST00000433892 UNC79Q9P2D8 2635 aa8.31□□□□□ -1.08
CD44-209ENST00000433892 COX7A2LO14548 114 aa8.31□□□□□ -1.08
CD44-209ENST00000433892 SHISA2Q6UWI4 295 aa8.31□□□□□ -1.08
CD44-209ENST00000433892 TRBV6-8A0A0A6YYG3 113 aa8.3□□□□□ -1.08
CD44-209ENST00000433892 COX7B2Q8TF08 81 aa8.3□□□□□ -1.08
CD44-209ENST00000433892 CHCHD5Q9BSY4 110 aa8.3□□□□□ -1.08
CD44-209ENST00000433892 DEFB130BP0DP73 79 aa8.29□□□□□ -1.08
CD44-209ENST00000433892 DEFB130AP0DP74 79 aa8.29□□□□□ -1.08
CD44-209ENST00000433892 GAGE2BQ13066 116 aa8.29□□□□□ -1.08
CD44-209ENST00000433892 GAGE2EQ4V326 116 aa8.29□□□□□ -1.08
CD44-209ENST00000433892 GAGE2DQ9UEU5 116 aa8.29□□□□□ -1.08
CD44-209ENST00000433892 TRAV26-1A0A087WT03 109 aa8.28□□□□□ -1.08
CD44-209ENST00000433892 MIR7-3HGQ8N6C7 128 aa8.28□□□□□ -1.08
CD44-209ENST00000433892 C15orf53Q8NAA6 179 aa8.28□□□□□ -1.08
CD44-209ENST00000433892 ANAPC13Q9BS18 74 aa8.28□□□□□ -1.08
CD44-209ENST00000433892 IGHV3OR16-9A0A0B4J2B5 98 aa8.27□□□□□ -1.09
CD44-209ENST00000433892 TTC32Q5I0X7 151 aa8.27□□□□□ -1.09
CD44-209ENST00000433892 DEFB121Q5J5C9 76 aa8.27□□□□□ -1.09
CD44-209ENST00000433892 C5orf38Q86SI9 138 aa8.27□□□□□ -1.09
CD44-209ENST00000433892 FASNP49327 2511 aaKnown RBP8.26□□□□□ -1.09
CD44-209ENST00000433892 LINC00158P58513 81 aa8.26□□□□□ -1.09
CD44-209ENST00000433892 FAM218AQ96MZ4 157 aa8.26□□□□□ -1.09
CD44-209ENST00000433892 HIVEP2P31629 2446 aa8.26□□□□□ -1.09
CD44-209ENST00000433892 HILS1P60008 231 aa8.26□□□□□ -1.09
CD44-209ENST00000433892 SND1-IT1Q9HBX3 110 aa8.26□□□□□ -1.09
CD44-209ENST00000433892 IGKV2-28A0A075B6P5 120 aa8.25□□□□□ -1.09
CD44-209ENST00000433892 IGKV2D-28P01615 120 aa8.25□□□□□ -1.09
CD44-209ENST00000433892 LINC00337Q8N6G1 96 aa8.25□□□□□ -1.09
CD44-209ENST00000433892 TRAV13-2A0A0B4J235 113 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 CRPP02741 224 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 SMR3AQ99954 134 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 A0A087WZ39 114 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 FAM240AA0A1B0GVK7 77 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 TRACP01848 142 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 PFN2P35080 140 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 KRTAP10-3P60369 221 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 PPDPFQ9H3Y8 114 aa8.24□□□□□ -1.09
CD44-209ENST00000433892 LINC00959A0A1B0GUT2 108 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 PF4P02776 101 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 BAALC-AS2P0C853 105 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 NHLRC4P0CG21 123 aaPredicted RBP8.23□□□□□ -1.09
CD44-209ENST00000433892 GYPEP15421 78 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 NDUFV3P56181 108 aaKnown RBP8.23□□□□□ -1.09
CD44-209ENST00000433892 C11orf68Q9H3H3 251 aaKnown RBP8.23□□□□□ -1.09
CD44-209ENST00000433892 CCL18P55774 89 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 Q9HAA7 133 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 TENM1Q9UKZ4 2725 aa8.23□□□□□ -1.09
CD44-209ENST00000433892 A0A096LPF7 62 aa8.22□□□□□ -1.09
CD44-209ENST00000433892 RPL28P46779 137 aaKnown RBP8.22□□□□□ -1.09
CD44-209ENST00000433892 XCL1P47992 114 aa8.22□□□□□ -1.09
CD44-209ENST00000433892 KIR2DL5BQ8NHK3 375 aa8.22□□□□□ -1.09
CD44-209ENST00000433892 NOTCH2Q04721 2471 aa8.22□□□□□ -1.09
CD44-209ENST00000433892 FAM222AQ5U5X8 452 aa8.22□□□□□ -1.09
CD44-209ENST00000433892 IBA57-AS1B1ANH7 110 aa8.21□□□□□ -1.1
CD44-209ENST00000433892 Q6Q795 121 aa8.21□□□□□ -1.1
CD44-209ENST00000433892 CLPSL2Q6UWE3 100 aa8.21□□□□□ -1.1
CD44-209ENST00000433892 SMIM11BQ8TCY0 68 aa8.21□□□□□ -1.1
CD44-209ENST00000433892 C22orf24Q9Y442 160 aa8.21□□□□□ -1.1
CD44-209ENST00000433892 C6orf226Q5I0X4 101 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 166.8 ms