RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 TMEM263Q8WUH6 116 aaKnown RBP7.65□□□□□ -1.18
CUX1-205ENST00000425244 PPDPFLQ8WWR9 84 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 WFDC10AQ9H1F0 79 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 TTC32Q5I0X7 151 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 C3orf56Q8N813 242 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 LINC00482Q8N8I6 264 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 VSIG2Q96IQ7 327 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 CARD19Q96LW7 228 aa7.65□□□□□ -1.18
CUX1-205ENST00000425244 IGHV3-33P01772 117 aa7.65□□□□□ -1.19
CUX1-205ENST00000425244 ADAMTSL4-AS1Q5T5F5 129 aa7.65□□□□□ -1.19
CUX1-205ENST00000425244 CDKN2A-AS1Q9UH64 79 aa7.65□□□□□ -1.19
CUX1-205ENST00000425244 RPL35AP18077 110 aaKnown RBP7.64□□□□□ -1.19
CUX1-205ENST00000425244 NOP10Q9NPE3 64 aaKnown RBP7.64□□□□□ -1.19
CUX1-205ENST00000425244 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.63□□□□□ -1.19
CUX1-205ENST00000425244 TMEM262E9PQX1 116 aa7.63□□□□□ -1.19
CUX1-205ENST00000425244 DAND5Q8N907 189 aa7.63□□□□□ -1.19
CUX1-205ENST00000425244 LITAFQ99732 161 aa7.63□□□□□ -1.19
CUX1-205ENST00000425244 A0A0B4J2C4 111 aa7.63□□□□□ -1.19
CUX1-205ENST00000425244 IGLV1-51P01701 117 aa7.63□□□□□ -1.19
CUX1-205ENST00000425244 LINC00694P0DN24 101 aa7.63□□□□□ -1.19
CUX1-205ENST00000425244 TRAV13-1A0A0B4J241 112 aa7.62□□□□□ -1.19
CUX1-205ENST00000425244 RPL36AP83881 106 aaKnown RBP7.62□□□□□ -1.19
CUX1-205ENST00000425244 RPL36ALQ969Q0 106 aaKnown RBP7.62□□□□□ -1.19
CUX1-205ENST00000425244 C9JAW5 83 aa7.62□□□□□ -1.19
CUX1-205ENST00000425244 K7EQD1 137 aa7.62□□□□□ -1.19
CUX1-205ENST00000425244 COX6A2Q02221 97 aa7.62□□□□□ -1.19
CUX1-205ENST00000425244 Q6Q795 121 aa7.62□□□□□ -1.19
CUX1-205ENST00000425244 A0A0U1RRA0 63 aa7.61□□□□□ -1.19
CUX1-205ENST00000425244 TEN1Q86WV5 123 aa7.61□□□□□ -1.19
CUX1-205ENST00000425244 ZNF625Q96I27 306 aaPredicted RBP7.61□□□□□ -1.19
CUX1-205ENST00000425244 TRAV4A0A0B4J268 109 aa7.61□□□□□ -1.19
CUX1-205ENST00000425244 TRGV2A0A075B6R0 118 aa7.6□□□□□ -1.19
CUX1-205ENST00000425244 SNCGO76070 127 aa7.6□□□□□ -1.19
CUX1-205ENST00000425244 MIAQ16674 131 aa7.6□□□□□ -1.19
CUX1-205ENST00000425244 IL17DQ8TAD2 202 aa7.6□□□□□ -1.19
CUX1-205ENST00000425244 TMEM101Q96IK0 257 aa7.6□□□□□ -1.19
CUX1-205ENST00000425244 ANKRD29Q8N6D5 301 aa7.6□□□□□ -1.19
CUX1-205ENST00000425244 SLC25A20O43772 301 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 NTM-AS1Q6ZSK4 140 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 LOC107984640A0A0U1RRK4 108 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 TRIAP1O43715 76 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 GIG44P09565 113 aaPredicted RBP7.59□□□□□ -1.19
CUX1-205ENST00000425244 LINC00242Q5T6M2 205 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 ANK2Q01484 3957 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 NOTCH1P46531 2555 aa7.59□□□□□ -1.19
CUX1-205ENST00000425244 TIRAPP58753 221 aa7.59□□□□□ -1.2
CUX1-205ENST00000425244 SPANXDQ9BXN6 97 aa7.59□□□□□ -1.2
CUX1-205ENST00000425244 Q9H8V8 135 aa7.59□□□□□ -1.2
CUX1-205ENST00000425244 SPANXCQ9NY87 97 aa7.59□□□□□ -1.2
CUX1-205ENST00000425244 LOC100131303A0A0U1RQF7 123 aa7.58□□□□□ -1.2
CUX1-205ENST00000425244 DAZ2Q13117 558 aaKnown RBP7.58□□□□□ -1.2
CUX1-205ENST00000425244 FAM19A5Q7Z5A7 132 aaPredicted RBP7.58□□□□□ -1.2
CUX1-205ENST00000425244 DAZ4Q86SG3 579 aaKnown RBP7.58□□□□□ -1.2
CUX1-205ENST00000425244 DAZ3Q9NR90 486 aaKnown RBP7.58□□□□□ -1.2
CUX1-205ENST00000425244 TRBV10-1A0A0K0K1A3 114 aa7.58□□□□□ -1.2
CUX1-205ENST00000425244 UBE2L6O14933 153 aa7.58□□□□□ -1.2
CUX1-205ENST00000425244 HERVK_113P63121 156 aa7.58□□□□□ -1.2
CUX1-205ENST00000425244 ATXN8Q156A1 80 aa7.58□□□□□ -1.2
CUX1-205ENST00000425244 OXLD1Q5BKU9 147 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 C9orf66Q5T8R8 295 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 IGLV5-45A0A087WSX0 123 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 IGKV3OR2-268A0A0C4DH90 116 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 NDUFA1O15239 70 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 ICOSQ9Y6W8 199 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 CMYA5Q8N3K9 4069 aa7.57□□□□□ -1.2
CUX1-205ENST00000425244 CIRBPQ14011 172 aaKnown RBP7.56□□□□□ -1.2
CUX1-205ENST00000425244 SBSPONQ8IVN8 264 aa7.56□□□□□ -1.2
CUX1-205ENST00000425244 TRGV4A0A0C4DH28 118 aa7.56□□□□□ -1.2
CUX1-205ENST00000425244 RPL13AP40429 203 aaKnown RBP7.56□□□□□ -1.2
CUX1-205ENST00000425244 LINC01620Q4KN68 170 aa7.56□□□□□ -1.2
CUX1-205ENST00000425244 C16orf74Q96GX8 76 aa7.56□□□□□ -1.2
CUX1-205ENST00000425244 TMEM243Q9BU79 118 aa7.56□□□□□ -1.2
CUX1-205ENST00000425244 TRBV30A0A0K0K1B3 111 aa7.55□□□□□ -1.2
CUX1-205ENST00000425244 PLAC8L1A1L4L8 177 aa7.55□□□□□ -1.2
CUX1-205ENST00000425244 SMIM1B2RUZ4 78 aa7.55□□□□□ -1.2
CUX1-205ENST00000425244 F5H768 121 aa7.55□□□□□ -1.2
CUX1-205ENST00000425244 CLEC2BQ92478 149 aa7.55□□□□□ -1.2
CUX1-205ENST00000425244 CDC42SE2Q9NRR3 84 aa7.55□□□□□ -1.2
CUX1-205ENST00000425244 J3KT08 172 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 CMC4P56277 68 aaPredicted RBP7.54□□□□□ -1.2
CUX1-205ENST00000425244 C19orf73Q9NVV2 129 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 NBEAL1Q6ZS30 2694 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 IGLV5-39A0A0G2JS06 123 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 COX6CP09669 75 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 NTN5Q8WTR8 489 aaPredicted RBP7.54□□□□□ -1.2
CUX1-205ENST00000425244 TIMM17BO60830 172 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 OR13C6PQ8NH95 151 aa7.54□□□□□ -1.2
CUX1-205ENST00000425244 MRPL23Q16540 153 aaKnown RBP7.53□□□□□ -1.2
CUX1-205ENST00000425244 MRAPQ8TCY5 172 aa7.53□□□□□ -1.2
CUX1-205ENST00000425244 LINC00308Q8TCZ7 52 aa7.53□□□□□ -1.2
CUX1-205ENST00000425244 DEFB130BP0DP73 79 aa7.53□□□□□ -1.2
CUX1-205ENST00000425244 DEFB130AP0DP74 79 aa7.53□□□□□ -1.2
CUX1-205ENST00000425244 A0A1B0GX51 115 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 MGAM2Q2M2H8 2515 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 SEC61GP60059 68 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 C2orf82Q6UX34 121 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 CSNK1G2-AS1Q8NCQ2 148 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 CHCHD5Q9BSY4 110 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 TOMM7Q9P0U1 55 aa7.52□□□□□ -1.21
CUX1-205ENST00000425244 TEX49A0A1B0GTD5 131 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms