RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 ANK3Q12955 4377 aaKnown RBP13.87□□□□□ -0.19
SHROOM1-202ENST00000378676 SNCGO76070 127 aa13.87□□□□□ -0.19
SHROOM1-202ENST00000378676 CSDC2Q9Y534 153 aaKnown RBP13.87□□□□□ -0.19
SHROOM1-202ENST00000378676 C2CD3Q4AC94 2353 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 LOC100131303A0A0U1RQF7 123 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 RPL13AP40429 203 aaKnown RBP13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 NTN5Q8WTR8 489 aaPredicted RBP13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 FASNP49327 2511 aaKnown RBP13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 MTORP42345 2549 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE7O76087 117 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE12FP0CL80 117 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE12GP0CL81 117 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE12IP0CL82 117 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 IFITM1P13164 125 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 CDC42SE2Q9NRR3 84 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 C19orf73Q9NVV2 129 aa13.86□□□□□ -0.19
SHROOM1-202ENST00000378676 A0A0U1RRA0 63 aa13.85□□□□□ -0.19
SHROOM1-202ENST00000378676 LINC01600Q96MT4 127 aa13.85□□□□□ -0.19
SHROOM1-202ENST00000378676 CLEC2BQ92478 149 aa13.85□□□□□ -0.19
SHROOM1-202ENST00000378676 FAM110AQ9BQ89 295 aa13.84□□□□□ -0.19
SHROOM1-202ENST00000378676 TRBV10-2A0A0K0K1G8 114 aa13.83□□□□□ -0.19
SHROOM1-202ENST00000378676 F5H768 121 aa13.83□□□□□ -0.19
SHROOM1-202ENST00000378676 IGLV1-51P01701 117 aa13.83□□□□□ -0.19
SHROOM1-202ENST00000378676 LINC00308Q8TCZ7 52 aa13.83□□□□□ -0.19
SHROOM1-202ENST00000378676 C16orf74Q96GX8 76 aa13.83□□□□□ -0.19
SHROOM1-202ENST00000378676 RNASE1P07998 156 aaKnown RBP13.83□□□□□ -0.2
SHROOM1-202ENST00000378676 C16orf95Q9H693 158 aa13.83□□□□□ -0.2
SHROOM1-202ENST00000378676 HECTD1Q9ULT8 2610 aa13.83□□□□□ -0.2
SHROOM1-202ENST00000378676 TTC32Q5I0X7 151 aa13.82□□□□□ -0.2
SHROOM1-202ENST00000378676 SOSTDC1Q6X4U4 206 aa13.82□□□□□ -0.2
SHROOM1-202ENST00000378676 TRGV2A0A075B6R0 118 aa13.81□□□□□ -0.2
SHROOM1-202ENST00000378676 CSNK1G2-AS1Q8NCQ2 148 aa13.81□□□□□ -0.2
SHROOM1-202ENST00000378676 CIRBPQ14011 172 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-202ENST00000378676 TMEM243Q9BU79 118 aa13.81□□□□□ -0.2
SHROOM1-202ENST00000378676 TEX49A0A1B0GTD5 131 aa13.8□□□□□ -0.2
SHROOM1-202ENST00000378676 H7C423 109 aa13.8□□□□□ -0.2
SHROOM1-202ENST00000378676 UBE2L6O14933 153 aa13.79□□□□□ -0.2
SHROOM1-202ENST00000378676 CMC4P56277 68 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-202ENST00000378676 COX6CP09669 75 aa13.79□□□□□ -0.2
SHROOM1-202ENST00000378676 PRIMA1Q86XR5 153 aa13.79□□□□□ -0.2
SHROOM1-202ENST00000378676 LST1O00453 97 aa13.78□□□□□ -0.2
SHROOM1-202ENST00000378676 CCDC179H3BU77 68 aa13.78□□□□□ -0.2
SHROOM1-202ENST00000378676 CRLF1O75462 422 aa13.78□□□□□ -0.2
SHROOM1-202ENST00000378676 MEIG1Q5JSS6 88 aa13.77□□□□□ -0.21
SHROOM1-202ENST00000378676 C2orf82Q6UX34 121 aa13.77□□□□□ -0.21
SHROOM1-202ENST00000378676 OVOL2Q9BRP0 275 aa13.77□□□□□ -0.21
SHROOM1-202ENST00000378676 TRBV6-4A0A1B0GX49 114 aa13.76□□□□□ -0.21
SHROOM1-202ENST00000378676 TRGV4A0A0C4DH28 118 aa13.76□□□□□ -0.21
SHROOM1-202ENST00000378676 UBE2WQ96B02 151 aa13.76□□□□□ -0.21
SHROOM1-202ENST00000378676 TRAV8-4A0A0B4J246 113 aa13.75□□□□□ -0.21
SHROOM1-202ENST00000378676 MRPL23Q16540 153 aaKnown RBP13.75□□□□□ -0.21
SHROOM1-202ENST00000378676 H3BT86 120 aa13.74□□□□□ -0.21
SHROOM1-202ENST00000378676 FHL2Q14192 279 aa13.74□□□□□ -0.21
SHROOM1-202ENST00000378676 HERV-K104P63124 156 aa13.73□□□□□ -0.21
SHROOM1-202ENST00000378676 IGLV4-60A0A075B6I1 120 aa13.72□□□□□ -0.21
SHROOM1-202ENST00000378676 IGKV3OR2-268A0A0C4DH90 116 aa13.72□□□□□ -0.21
SHROOM1-202ENST00000378676 SHISA2Q6UWI4 295 aa13.72□□□□□ -0.21
SHROOM1-202ENST00000378676 C15orf53Q8NAA6 179 aa13.72□□□□□ -0.21
SHROOM1-202ENST00000378676 SMIM20Q8N5G0 67 aa13.71□□□□□ -0.22
SHROOM1-202ENST00000378676 HILS1P60008 231 aa13.7□□□□□ -0.22
SHROOM1-202ENST00000378676 TRBV6-8A0A0A6YYG3 113 aa13.69□□□□□ -0.22
SHROOM1-202ENST00000378676 KRTAP10-3P60369 221 aa13.69□□□□□ -0.22
SHROOM1-202ENST00000378676 COX7B2Q8TF08 81 aa13.68□□□□□ -0.22
SHROOM1-202ENST00000378676 NOTCH2Q04721 2471 aa13.68□□□□□ -0.22
SHROOM1-202ENST00000378676 COX7A2LO14548 114 aa13.68□□□□□ -0.22
SHROOM1-202ENST00000378676 COPS9Q8WXC6 57 aa13.68□□□□□ -0.22
SHROOM1-202ENST00000378676 CHCHD5Q9BSY4 110 aa13.67□□□□□ -0.22
SHROOM1-202ENST00000378676 TOMM7Q9P0U1 55 aa13.67□□□□□ -0.22
SHROOM1-202ENST00000378676 FN1P02751 2386 aaKnown RBP13.66□□□□□ -0.22
SHROOM1-202ENST00000378676 FAM240AA0A1B0GVK7 77 aa13.66□□□□□ -0.22
SHROOM1-202ENST00000378676 DEFB130BP0DP73 79 aa13.66□□□□□ -0.22
SHROOM1-202ENST00000378676 DEFB130AP0DP74 79 aa13.66□□□□□ -0.22
SHROOM1-202ENST00000378676 SMR3AQ99954 134 aa13.66□□□□□ -0.22
SHROOM1-202ENST00000378676 IGHV3OR16-9A0A0B4J2B5 98 aa13.64□□□□□ -0.23
SHROOM1-202ENST00000378676 MIR7-3HGQ8N6C7 128 aa13.64□□□□□ -0.23
SHROOM1-202ENST00000378676 DEFB121Q5J5C9 76 aa13.63□□□□□ -0.23
SHROOM1-202ENST00000378676 TMEM126AQ9H061 195 aa13.63□□□□□ -0.23
SHROOM1-202ENST00000378676 PPDPFQ9H3Y8 114 aa13.62□□□□□ -0.23
SHROOM1-202ENST00000378676 FAM218AQ96MZ4 157 aa13.61□□□□□ -0.23
SHROOM1-202ENST00000378676 TRBV7-7A0A0K0K1E9 115 aa13.61□□□□□ -0.23
SHROOM1-202ENST00000378676 LINC00612Q8N6U2 182 aa13.61□□□□□ -0.23
SHROOM1-202ENST00000378676 LINC00482Q8N8I6 264 aa13.61□□□□□ -0.23
SHROOM1-202ENST00000378676 PF4P02776 101 aa13.6□□□□□ -0.23
SHROOM1-202ENST00000378676 C5orf38Q86SI9 138 aa13.6□□□□□ -0.23
SHROOM1-202ENST00000378676 KIR2DL5BQ8NHK3 375 aa13.6□□□□□ -0.23
SHROOM1-202ENST00000378676 LINC00337Q8N6G1 96 aa13.6□□□□□ -0.23
SHROOM1-202ENST00000378676 IGKV2-28A0A075B6P5 120 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 IGKV2D-28P01615 120 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 SPATA3Q8NHX4 192 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 X6R8D5 127 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 OTOGQ6ZRI0 2925 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 HIVEP2P31629 2446 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 A0A087WZ39 114 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 GYPEP15421 78 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 VWFP04275 2813 aa13.59□□□□□ -0.23
SHROOM1-202ENST00000378676 LINC00959A0A1B0GUT2 108 aa13.58□□□□□ -0.24
SHROOM1-202ENST00000378676 SND1-IT1Q9HBX3 110 aa13.58□□□□□ -0.24
SHROOM1-202ENST00000378676 NBEAL2Q6ZNJ1 2754 aa13.58□□□□□ -0.24
SHROOM1-202ENST00000378676 LY6G6DO95868 133 aa13.57□□□□□ -0.24
SHROOM1-202ENST00000378676 CRPP02741 224 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms