RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 J3QQQ9 107 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 K7ERU9 68 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 LEPROTO15243 131 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 CD28P10747 220 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 ZNF22P17026 224 aaPredicted RBP3.39□□□□□ -1.87
USP48-202ENST00000374730 TSPEAR-AS2P59090 65 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 KRTAP10-3P60369 221 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 TMEM170BQ5T4T1 132 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 SCGB1D4Q6XE38 83 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 Q6ZVQ6 151 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 SLC25A29Q8N8R3 303 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 LINC01587Q99440 93 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 NAA38Q9BRA0 125 aaKnown RBP3.39□□□□□ -1.87
USP48-202ENST00000374730 SPANXA1Q9NS26 97 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 TSSC4Q9Y5U2 329 aaPredicted RBP3.39□□□□□ -1.87
USP48-202ENST00000374730 CUBNO60494 3623 aa3.39□□□□□ -1.87
USP48-202ENST00000374730 NIPBLQ6KC79 2804 aaeCLIP3.38□□□□□ -1.87
USP48-202ENST00000374730 TRBV10-1A0A0K0K1A3 114 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 IGHV3-30P01768 117 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 IGHV3-30-5P0DP03 117 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 LGALS3P17931 250 aaKnown RBP3.38□□□□□ -1.87
USP48-202ENST00000374730 EMP1P54849 157 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 MRPS36P82909 103 aaKnown RBP3.38□□□□□ -1.87
USP48-202ENST00000374730 C1orf158Q8N1D5 194 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 LINC01006Q8NI28 216 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 FAM104AQ969W3 186 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 CHCHD7Q9BUK0 85 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 TIMM21Q9BVV7 248 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 MRPL16Q9NX20 251 aaKnown RBP3.38□□□□□ -1.87
USP48-202ENST00000374730 UBE2D4Q9Y2X8 147 aa3.38□□□□□ -1.87
USP48-202ENST00000374730 MTORP42345 2549 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 CMYA5Q8N3K9 4069 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 IGHV3-73A0A0B4J1V6 119 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 TRAV4A0A0B4J268 109 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 A0A0J9YXV3 536 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 TINCRA0A1B0GVN0 87 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 F8W1H4 67 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 IGLV1-51P01701 117 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 HTN1P15515 57 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 COTL1Q14019 142 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 LYRM7Q5U5X0 104 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 ZNF418Q8TF45 676 aaPredicted RBP3.37□□□□□ -1.87
USP48-202ENST00000374730 DEFB104AQ8WTQ1 72 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 TMEM263Q8WUH6 116 aaKnown RBP3.37□□□□□ -1.87
USP48-202ENST00000374730 OTOGQ6ZRI0 2925 aa3.37□□□□□ -1.87
USP48-202ENST00000374730 ACANP16112 2415 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 NBEAL1Q6ZS30 2694 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 IGHV1-58A0A0C4DH39 117 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 A0A0J9YWU9 116 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 TMEM238C9JI98 176 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 K7EQD1 137 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 TSPAN13O95857 204 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 PRM2P04554 102 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 RPL35AP18077 110 aaKnown RBP3.36□□□□□ -1.87
USP48-202ENST00000374730 AZU1P20160 251 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 UBE2D3P61077 147 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 UBE2D2P62837 147 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 SMAGPQ0VAQ4 97 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 DAZ2Q13117 558 aaKnown RBP3.36□□□□□ -1.87
USP48-202ENST00000374730 FAM19A3Q7Z5A8 133 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 NDUFA11Q86Y39 141 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 C10orf126Q8N4M7 172 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 CITED1Q99966 193 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 XCL2Q9UBD3 114 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 PRO0461Q9UI25 63 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 JMJD1CQ15652 2540 aa3.36□□□□□ -1.87
USP48-202ENST00000374730 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 TRGV1A0A0A0MS02 117 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 A0A0B4J2C4 111 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 A0A0J9YXY3 114 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 IGKV2-29A2NJV5 120 aaPredicted RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 G3V4G9 280 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 CRLF1O75462 422 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 GIG44P09565 113 aaPredicted RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 IGHV3-30-3P0DP02 117 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 Q6ZUT4 128 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 DAZ4Q86SG3 579 aaKnown RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 SBSPONQ8IVN8 264 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 C16orf74Q96GX8 76 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 VSIG2Q96IQ7 327 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 VPS25Q9BRG1 176 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 SPANXDQ9BXN6 97 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 GEMIN7Q9H840 131 aaKnown RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 DAZ3Q9NR90 486 aaKnown RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 SPANXCQ9NY87 97 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 Q9UF83 564 aa3.35□□□□□ -1.87
USP48-202ENST00000374730 CSDC2Q9Y534 153 aaKnown RBP3.35□□□□□ -1.87
USP48-202ENST00000374730 DNAH3Q8TD57 4116 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 TRBV20-1A0A075B6N2 111 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 TEX48A0A1B0GUV7 120 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 PLAC8L1A1L4L8 177 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 H3BMG7 143 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 TIMM17BO60830 172 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 APOMO95445 188 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 HERVK_113P63121 156 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 ZFAND6Q6FIF0 208 aa3.34□□□□□ -1.87
USP48-202ENST00000374730 CEMP1Q6PRD7 247 aaPredicted RBP3.34□□□□□ -1.87
USP48-202ENST00000374730 Q6ZTI0 123 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms