RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 LITAFQ99732 161 aa13.63□□□□□ -0.23
HDAC1-201ENST00000373548 F5H768 121 aa13.63□□□□□ -0.23
HDAC1-201ENST00000373548 FABP2P12104 132 aa13.63□□□□□ -0.23
HDAC1-201ENST00000373548 GTF2H5Q6ZYL4 71 aa13.62□□□□□ -0.23
HDAC1-201ENST00000373548 SPCS1Q9Y6A9 102 aa13.61□□□□□ -0.23
HDAC1-201ENST00000373548 TRAV26-1A0A087WT03 109 aa13.6□□□□□ -0.23
HDAC1-201ENST00000373548 IGKV3OR2-268A0A0C4DH90 116 aa13.6□□□□□ -0.23
HDAC1-201ENST00000373548 NDUFA1O15239 70 aa13.6□□□□□ -0.23
HDAC1-201ENST00000373548 APOMO95445 188 aa13.6□□□□□ -0.23
HDAC1-201ENST00000373548 RETNQ9HD89 108 aa13.6□□□□□ -0.23
HDAC1-201ENST00000373548 MUSTN1Q8IVN3 82 aa13.59□□□□□ -0.23
HDAC1-201ENST00000373548 ADAMTSL4-AS1Q5T5F5 129 aa13.58□□□□□ -0.23
HDAC1-201ENST00000373548 PKD1L1Q8TDX9 2849 aa13.58□□□□□ -0.24
HDAC1-201ENST00000373548 CFC1BP0CG36 223 aa13.58□□□□□ -0.24
HDAC1-201ENST00000373548 CFC1P0CG37 223 aa13.58□□□□□ -0.24
HDAC1-201ENST00000373548 PGPEP1Q9NXJ5 209 aa13.58□□□□□ -0.24
HDAC1-201ENST00000373548 CMYA5Q8N3K9 4069 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 A4D1N5 150 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 HTN3P15516 51 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 A0A1B0GUV1 79 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 TMEM262E9PQX1 116 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 G3V4G9 280 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 RBX1P62877 108 aa13.57□□□□□ -0.24
HDAC1-201ENST00000373548 SPANXDQ9BXN6 97 aa13.56□□□□□ -0.24
HDAC1-201ENST00000373548 SPANXCQ9NY87 97 aa13.56□□□□□ -0.24
HDAC1-201ENST00000373548 RPL24P83731 157 aaKnown RBP13.55□□□□□ -0.24
HDAC1-201ENST00000373548 Q9H8V8 135 aa13.55□□□□□ -0.24
HDAC1-201ENST00000373548 TIMM17BO60830 172 aa13.55□□□□□ -0.24
HDAC1-201ENST00000373548 EIF4EBP3O60516 100 aaPredicted RBP13.54□□□□□ -0.24
HDAC1-201ENST00000373548 TSPAN13O95857 204 aa13.54□□□□□ -0.24
HDAC1-201ENST00000373548 TEX48A0A1B0GUV7 120 aa13.54□□□□□ -0.24
HDAC1-201ENST00000373548 MIAQ16674 131 aa13.54□□□□□ -0.24
HDAC1-201ENST00000373548 IGHV3OR16-9A0A0B4J2B5 98 aa13.53□□□□□ -0.24
HDAC1-201ENST00000373548 LINC00959A0A1B0GUT2 108 aa13.53□□□□□ -0.24
HDAC1-201ENST00000373548 PRSS2P07478 247 aa13.52□□□□□ -0.24
HDAC1-201ENST00000373548 MRPL23Q16540 153 aaKnown RBP13.52□□□□□ -0.24
HDAC1-201ENST00000373548 ZNF625Q96I27 306 aaPredicted RBP13.52□□□□□ -0.24
HDAC1-201ENST00000373548 PRO1854Q9UHT4 67 aa13.51□□□□□ -0.25
HDAC1-201ENST00000373548 A0A0B4J2C4 111 aa13.5□□□□□ -0.25
HDAC1-201ENST00000373548 ICOSQ9Y6W8 199 aa13.5□□□□□ -0.25
HDAC1-201ENST00000373548 A0A087WZ39 114 aa13.49□□□□□ -0.25
HDAC1-201ENST00000373548 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.49□□□□□ -0.25
HDAC1-201ENST00000373548 NPC2P61916 151 aa13.49□□□□□ -0.25
HDAC1-201ENST00000373548 DAND5Q8N907 189 aa13.49□□□□□ -0.25
HDAC1-201ENST00000373548 CIRBPQ14011 172 aaKnown RBP13.48□□□□□ -0.25
HDAC1-201ENST00000373548 CLPSL2Q6UWE3 100 aa13.48□□□□□ -0.25
HDAC1-201ENST00000373548 Q8N3U1 123 aa13.48□□□□□ -0.25
HDAC1-201ENST00000373548 SH2D6Q7Z4S9 175 aa13.48□□□□□ -0.25
HDAC1-201ENST00000373548 C5orf38Q86SI9 138 aa13.48□□□□□ -0.25
HDAC1-201ENST00000373548 COX7B2Q8TF08 81 aa13.48□□□□□ -0.25
HDAC1-201ENST00000373548 SS18Q15532 418 aa13.47□□□□□ -0.25
HDAC1-201ENST00000373548 SFTA2Q6UW10 78 aa13.47□□□□□ -0.25
HDAC1-201ENST00000373548 C11orf68Q9H3H3 251 aaKnown RBP13.47□□□□□ -0.25
HDAC1-201ENST00000373548 IGHV3-33P01772 117 aa13.46□□□□□ -0.25
HDAC1-201ENST00000373548 HERV-K104P63124 156 aa13.46□□□□□ -0.25
HDAC1-201ENST00000373548 IFITM1P13164 125 aa13.46□□□□□ -0.26
HDAC1-201ENST00000373548 DNAH3Q8TD57 4116 aa13.46□□□□□ -0.26
HDAC1-201ENST00000373548 XCL1P47992 114 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 LELP1Q5T871 98 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 LINC00269Q8N2A0 174 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 TOMM7Q9P0U1 55 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 LOC107984156A0A0G2JMH3 177 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 A0A0U1RRA0 63 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 ARL17AQ8IVW1 177 aa13.45□□□□□ -0.26
HDAC1-201ENST00000373548 H3BMG7 143 aa13.44□□□□□ -0.26
HDAC1-201ENST00000373548 MEIG1Q5JSS6 88 aa13.44□□□□□ -0.26
HDAC1-201ENST00000373548 ANGP03950 147 aaKnown RBP13.43□□□□□ -0.26
HDAC1-201ENST00000373548 Q6ZTC4 211 aa13.43□□□□□ -0.26
HDAC1-201ENST00000373548 LINC00308Q8TCZ7 52 aa13.43□□□□□ -0.26
HDAC1-201ENST00000373548 ERG28Q9UKR5 140 aa13.42□□□□□ -0.26
HDAC1-201ENST00000373548 ANK2Q01484 3957 aa13.42□□□□□ -0.26
HDAC1-201ENST00000373548 TENM3Q9P273 2699 aa13.42□□□□□ -0.26
HDAC1-201ENST00000373548 A0A0J9YWU9 116 aa13.41□□□□□ -0.26
HDAC1-201ENST00000373548 NOTCH1P46531 2555 aa13.41□□□□□ -0.26
HDAC1-201ENST00000373548 H7C2G1 150 aa13.4□□□□□ -0.26
HDAC1-201ENST00000373548 REG3AQ06141 175 aa13.4□□□□□ -0.26
HDAC1-201ENST00000373548 LYPD5Q6UWN5 251 aa13.4□□□□□ -0.26
HDAC1-201ENST00000373548 H3BNG1 76 aa13.4□□□□□ -0.26
HDAC1-201ENST00000373548 PRB2P02812 416 aaPredicted RBP13.4□□□□□ -0.26
HDAC1-201ENST00000373548 SOSTDC1Q6X4U4 206 aa13.4□□□□□ -0.26
HDAC1-201ENST00000373548 KPRPQ5T749 579 aaPredicted RBP13.39□□□□□ -0.27
HDAC1-201ENST00000373548 LYRM7Q5U5X0 104 aa13.39□□□□□ -0.27
HDAC1-201ENST00000373548 CHCHD10Q8WYQ3 142 aaPredicted RBP13.38□□□□□ -0.27
HDAC1-201ENST00000373548 PSMB2P49721 201 aa13.37□□□□□ -0.27
HDAC1-201ENST00000373548 CD164L2Q6UWJ8 174 aa13.37□□□□□ -0.27
HDAC1-201ENST00000373548 LINC01561Q8N1V8 128 aa13.37□□□□□ -0.27
HDAC1-201ENST00000373548 IGLV10-54A0A075B6I4 117 aa13.37□□□□□ -0.27
HDAC1-201ENST00000373548 OCIAD2Q56VL3 154 aa13.37□□□□□ -0.27
HDAC1-201ENST00000373548 PRO0461Q9UI25 63 aa13.37□□□□□ -0.27
HDAC1-201ENST00000373548 F8W1H4 67 aa13.36□□□□□ -0.27
HDAC1-201ENST00000373548 TCL1BO95988 128 aa13.36□□□□□ -0.27
HDAC1-201ENST00000373548 NANOS2P60321 138 aaKnown RBP13.36□□□□□ -0.27
HDAC1-201ENST00000373548 Q1RN00 199 aa13.36□□□□□ -0.27
HDAC1-201ENST00000373548 SCGB1C2P0DMR2 95 aa13.35□□□□□ -0.27
HDAC1-201ENST00000373548 WFDC2Q14508 124 aa13.35□□□□□ -0.27
HDAC1-201ENST00000373548 MTURNQ8N3F0 131 aa13.35□□□□□ -0.27
HDAC1-201ENST00000373548 COPS9Q8WXC6 57 aa13.35□□□□□ -0.27
HDAC1-201ENST00000373548 C6orf226Q5I0X4 101 aa13.34□□□□□ -0.27
HDAC1-201ENST00000373548 C11orf45Q8TAV5 145 aa13.34□□□□□ -0.27
HDAC1-201ENST00000373548 K7EIL1 84 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms