RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 FAM229AH3BQW9 127 aa6.27□□□□□ -1.41
UPF2-202ENST00000357604 IGKV2-24A0A0C4DH68 120 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 LINC01546A6NGU7 62 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 Q6ZVH6 145 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 HIST3H2BBQ8N257 126 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 ASH1LQ9NR48 2969 aaKnown RBP6.26□□□□□ -1.41
UPF2-202ENST00000357604 C3orf79P0CE67 100 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 OPRPNQ99935 248 aaPredicted RBP6.26□□□□□ -1.41
UPF2-202ENST00000357604 UBE2AP49459 152 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 RNF151Q2KHN1 245 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 PLA2G1BP04054 148 aaKnown RBP6.26□□□□□ -1.41
UPF2-202ENST00000357604 ATMQ13315 3056 aa6.26□□□□□ -1.41
UPF2-202ENST00000357604 JMJD1CQ15652 2540 aa6.25□□□□□ -1.41
UPF2-202ENST00000357604 UQCR10Q9UDW1 63 aa6.25□□□□□ -1.41
UPF2-202ENST00000357604 A0A087WZ39 114 aa6.25□□□□□ -1.41
UPF2-202ENST00000357604 SMIM6P0DI80 62 aa6.25□□□□□ -1.41
UPF2-202ENST00000357604 UTP20O75691 2785 aaKnown RBP6.25□□□□□ -1.41
UPF2-202ENST00000357604 NTM-AS1Q6ZSK4 140 aa6.25□□□□□ -1.41
UPF2-202ENST00000357604 ERG28Q9UKR5 140 aa6.25□□□□□ -1.41
UPF2-202ENST00000357604 KALRNO60229 2985 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 TRAV13-2A0A0B4J235 113 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 AMELXQ99217 191 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 IFITM1P13164 125 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 BATFQ16520 125 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 ATOH7Q8N100 152 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 C12orf57Q99622 126 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 PAM16Q9Y3D7 125 aa6.24□□□□□ -1.41
UPF2-202ENST00000357604 TMEM223A0PJW6 202 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 F8WEM9 126 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 HIST1H2BLQ99880 126 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 A0A0U1RRA0 63 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 IGIPA6NJ69 53 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 Q8N814 137 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 ETDCA0A1B0GVM5 59 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 WDFY3Q8IZQ1 3526 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 A0A087WTM6 91 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 ZNF575Q86XF7 245 aa6.23□□□□□ -1.41
UPF2-202ENST00000357604 ZNF706Q9Y5V0 76 aaPredicted RBP6.23□□□□□ -1.41
UPF2-202ENST00000357604 PRRC2CQ9Y520 2896 aaKnown RBP6.23□□□□□ -1.41
UPF2-202ENST00000357604 ZFHX4Q86UP3 3567 aa6.22□□□□□ -1.41
UPF2-202ENST00000357604 GVQW2A0A096LPI5 108 aaPredicted RBP6.22□□□□□ -1.41
UPF2-202ENST00000357604 STPG4Q8N801 248 aa6.22□□□□□ -1.41
UPF2-202ENST00000357604 ZNF625Q96I27 306 aaPredicted RBP6.22□□□□□ -1.41
UPF2-202ENST00000357604 ENHOQ6UWT2 76 aa6.22□□□□□ -1.41
UPF2-202ENST00000357604 WNK1Q9H4A3 2382 aa6.22□□□□□ -1.41
UPF2-202ENST00000357604 COA6Q5JTJ3 125 aaKnown RBP6.22□□□□□ -1.41
UPF2-202ENST00000357604 TLN2Q9Y4G6 2542 aa6.21□□□□□ -1.41
UPF2-202ENST00000357604 ZNF22P17026 224 aaPredicted RBP6.21□□□□□ -1.41
UPF2-202ENST00000357604 MTORP42345 2549 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 E9PLD3 99 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 CDKN2A-AS1Q9UH64 79 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 SORL1Q92673 2214 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 C5orf52A6NGY3 159 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 SMIM13P0DJ93 91 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 HIVEP1P15822 2718 aa6.21□□□□□ -1.42
UPF2-202ENST00000357604 GAS8-AS1O95177 125 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 ODF1Q14990 250 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 LINC00242Q5T6M2 205 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 FOXI1Q12951 378 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 YPEL4Q96NS1 127 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 FAM19A5Q7Z5A7 132 aaPredicted RBP6.2□□□□□ -1.42
UPF2-202ENST00000357604 DNAL4O96015 105 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 PRR34Q9NV39 138 aa6.2□□□□□ -1.42
UPF2-202ENST00000357604 HRNRQ86YZ3 2850 aaPredicted RBP6.19□□□□□ -1.42
UPF2-202ENST00000357604 NPC2P61916 151 aa6.19□□□□□ -1.42
UPF2-202ENST00000357604 NBEAQ8NFP9 2946 aa6.19□□□□□ -1.42
UPF2-202ENST00000357604 SPEGQ15772 3267 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 FBN2P35556 2912 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 HSD52Q0P140 79 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 TAL2Q16559 108 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 A0A0J9YXY3 114 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 C21orf62-AS1Q17RA5 79 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 H3BQ85 93 aa6.18□□□□□ -1.42
UPF2-202ENST00000357604 NDUFC2-KCTD14E9PQ53 114 aa6.17□□□□□ -1.42
UPF2-202ENST00000357604 H7C2G1 150 aa6.17□□□□□ -1.42
UPF2-202ENST00000357604 M0R378 163 aa6.17□□□□□ -1.42
UPF2-202ENST00000357604 FAM19A3Q7Z5A8 133 aa6.17□□□□□ -1.42
UPF2-202ENST00000357604 TIMM17BO60830 172 aa6.17□□□□□ -1.42
UPF2-202ENST00000357604 SPANXB1Q9NS25 103 aaPredicted RBP6.17□□□□□ -1.42
UPF2-202ENST00000357604 NUPR1O60356 82 aa6.16□□□□□ -1.42
UPF2-202ENST00000357604 NCR3O14931 201 aa6.16□□□□□ -1.42
UPF2-202ENST00000357604 RPL13AP40429 203 aaKnown RBP6.16□□□□□ -1.42
UPF2-202ENST00000357604 RPL28P46779 137 aaKnown RBP6.16□□□□□ -1.42
UPF2-202ENST00000357604 SND1-IT1Q9HBX3 110 aa6.16□□□□□ -1.42
UPF2-202ENST00000357604 M0QXV9 152 aa6.16□□□□□ -1.42
UPF2-202ENST00000357604 REG3GQ6UW15 175 aa6.15□□□□□ -1.42
UPF2-202ENST00000357604 MIR7-3HGQ8N6C7 128 aa6.15□□□□□ -1.42
UPF2-202ENST00000357604 SMIM1B2RUZ4 78 aa6.15□□□□□ -1.43
UPF2-202ENST00000357604 AKAP9Q99996 3911 aa6.14□□□□□ -1.43
UPF2-202ENST00000357604 DDTP30046 118 aa6.14□□□□□ -1.43
UPF2-202ENST00000357604 C4orf48Q5BLP8 95 aa6.14□□□□□ -1.43
UPF2-202ENST00000357604 COX6A2Q02221 97 aa6.14□□□□□ -1.43
UPF2-202ENST00000357604 CNBPP62633 177 aaKnown RBP6.14□□□□□ -1.43
UPF2-202ENST00000357604 Q6ZRU5 148 aa6.14□□□□□ -1.43
UPF2-202ENST00000357604 SPANXDQ9BXN6 97 aa6.14□□□□□ -1.43
UPF2-202ENST00000357604 COX8AP10176 69 aa6.13□□□□□ -1.43
UPF2-202ENST00000357604 BVES-AS1Q5T3Y7 98 aa6.13□□□□□ -1.43
UPF2-202ENST00000357604 DIRC1Q969H9 104 aa6.13□□□□□ -1.43
UPF2-202ENST00000357604 BOD1L1Q8NFC6 3051 aa6.13□□□□□ -1.43
UPF2-202ENST00000357604 FAM19A1Q7Z5A9 133 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms