RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 XCL2Q9UBD3 114 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 RYR1P21817 5038 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 TRBV25-1A0A075B6N4 114 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 E9PLD3 99 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 SAP30O75446 220 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-30P01768 117 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-30-5P0DP03 117 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 ZNF22P17026 224 aaPredicted RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 LEPP41159 167 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 UBE2D3P61077 147 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 UBE2D2P62837 147 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 LAGE3Q14657 143 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 ADAMTSL4-AS1Q5T5F5 129 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 C20orf203Q8NBC4 194 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 ZNF418Q8TF45 676 aaPredicted RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 VAMP8Q9BV40 100 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 LOC107984156A0A0G2JMH3 177 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 RPL35AP18077 110 aaKnown RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 KPRPQ5T749 579 aaPredicted RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 ARL17AQ8IVW1 177 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 ORAOV1Q8WV07 137 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IFI27L1Q96BM0 104 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 ZNF625Q96I27 306 aaPredicted RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 VSIG2Q96IQ7 327 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 C2orf48Q96LS8 159 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 NXT2Q9NPJ8 142 aaKnown RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 UQCR10Q9UDW1 63 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 CSDC2Q9Y534 153 aaKnown RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 ABCA13Q86UQ4 5058 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 A0A0J9YY99 117 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 ID1P41134 155 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 SOSTDC1Q6X4U4 206 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 SDIM1Q6ZPB5 146 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 LINC01587Q99440 93 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 GTSF1LQ9H1H1 148 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 SPANXB1Q9NS25 103 aaPredicted RBP1.56□□□□□ -2.16
VPS54-202ENST00000354504 STAB2Q8WWQ8 2551 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 IGKV3OR2-268A0A0C4DH90 116 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 HSBP1L1C9JCN9 74 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 M0R2P5 195 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 G0S2P27469 103 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 NMUP48645 174 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 RHOHQ15669 191 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 ZNF56Q15929 161 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 CEMP1Q6PRD7 247 aaPredicted RBP1.56□□□□□ -2.16
VPS54-202ENST00000354504 C2orf66Q6UXQ4 117 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 Q6ZN92 141 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 CELA1Q9UNI1 258 aa1.56□□□□□ -2.16
VPS54-202ENST00000354504 TSSC4Q9Y5U2 329 aaPredicted RBP1.56□□□□□ -2.16
VPS54-202ENST00000354504 F8VRH5 84 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CRLF1O75462 422 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 PRSS2P07478 247 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 ASIPP42127 132 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 HINT1P49773 126 aaPredicted RBP1.55□□□□□ -2.16
VPS54-202ENST00000354504 CRYBA4P53673 196 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 REG3GQ6UW15 175 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CD164L2Q6UWJ8 174 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 Q6ZTI0 123 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 NDUFA11Q86Y39 141 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 KRTAP7-1Q8IUC3 87 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 TIMM21Q9BVV7 248 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 MAP1LC3CQ9BXW4 147 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CHTOPQ9Y3Y2 248 aaKnown RBP1.55□□□□□ -2.16
VPS54-202ENST00000354504 GPR98Q8WXG9 6306 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 SDHAF1A6NFY7 115 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 M0R143 59 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 DEFB4AO15263 64 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 KIAA0087Q14695 138 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 SS18Q15532 418 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 LINC00242Q5T6M2 205 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 SAMD13Q5VXD3 122 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 SLC25A29Q8N8R3 303 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 KIR2DL5BQ8NHK3 375 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 TMEM263Q8WUH6 116 aaKnown RBP1.55□□□□□ -2.16
VPS54-202ENST00000354504 DNAJC30Q96LL9 226 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-64A0A075B6Q5 118 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-38A0A0C4DH36 116 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 IGKCP01834 107 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CFC1BP0CG36 223 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CFC1P0CG37 223 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 DEFB130BP0DP73 79 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 DEFB130AP0DP74 79 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 HNRNPA3P51991 378 aaKnown RBP1.55□□□□□ -2.16
VPS54-202ENST00000354504 NOTCH2NLQ7Z3S9 236 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CEND1Q8N111 149 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 CDC42SE2Q9NRR3 84 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 TP53TG1Q9Y2A0 90 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 GOLT1BQ9Y3E0 138 aa1.55□□□□□ -2.16
VPS54-202ENST00000354504 TRGV1A0A0A0MS02 117 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 TRAV4A0A0B4J268 109 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 TINCRA0A1B0GVN0 87 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 SMIM1B2RUZ4 78 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 HTN3P15516 51 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 XGP55808 180 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 RNASE13Q5GAN3 156 aaKnown RBP1.54□□□□□ -2.16
VPS54-202ENST00000354504 SFTA2Q6UW10 78 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 NAA38Q9BRA0 125 aaKnown RBP1.54□□□□□ -2.16
VPS54-202ENST00000354504 VCX2Q9H322 139 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 MAP1LC3AQ9H492 121 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 HSPB8Q9UJY1 196 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms