RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CEND1Q8N111 149 aa8.25□□□□□ -1.09
VPS4A-201ENST00000254950 POM121L12Q8N7R1 296 aa8.25□□□□□ -1.09
VPS4A-201ENST00000254950 HIGD1BQ9P298 99 aa8.25□□□□□ -1.09
VPS4A-201ENST00000254950 MGAM2Q2M2H8 2515 aa8.24□□□□□ -1.09
VPS4A-201ENST00000254950 TIRAPP58753 221 aa8.24□□□□□ -1.09
VPS4A-201ENST00000254950 Q6ZTC4 211 aa8.24□□□□□ -1.09
VPS4A-201ENST00000254950 PGPEP1Q9NXJ5 209 aa8.24□□□□□ -1.09
VPS4A-201ENST00000254950 SETXQ7Z333 2677 aaKnown RBP8.24□□□□□ -1.09
VPS4A-201ENST00000254950 VPS25Q9BRG1 176 aa8.23□□□□□ -1.09
VPS4A-201ENST00000254950 CHCHD7Q9BUK0 85 aa8.23□□□□□ -1.09
VPS4A-201ENST00000254950 EDA2RQ9HAV5 297 aa8.23□□□□□ -1.09
VPS4A-201ENST00000254950 PCP4P48539 62 aa8.22□□□□□ -1.09
VPS4A-201ENST00000254950 NFE4Q86UQ8 179 aa8.22□□□□□ -1.09
VPS4A-201ENST00000254950 C10orf126Q8N4M7 172 aa8.22□□□□□ -1.09
VPS4A-201ENST00000254950 IFITM1P13164 125 aa8.22□□□□□ -1.09
VPS4A-201ENST00000254950 SPAG11BQ08648 103 aa8.22□□□□□ -1.09
VPS4A-201ENST00000254950 CHCHD10Q8WYQ3 142 aaPredicted RBP8.22□□□□□ -1.09
VPS4A-201ENST00000254950 COL6A5A8TX70 2615 aa8.21□□□□□ -1.09
VPS4A-201ENST00000254950 GAGE12HA6NDE8 117 aa8.21□□□□□ -1.09
VPS4A-201ENST00000254950 CDC42SE2Q9NRR3 84 aa8.21□□□□□ -1.09
VPS4A-201ENST00000254950 ZANQ9Y493 2812 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 TMEM223A0PJW6 202 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 CAMK2N2Q96S95 79 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 IGKV2D-26A0A0A0MRZ7 120 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 CXCL5P42830 114 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 CSNK1G2-AS1Q8NCQ2 148 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 TM2D2Q9BX73 214 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 CELA1Q9UNI1 258 aa8.21□□□□□ -1.1
VPS4A-201ENST00000254950 COX11Q9Y6N1 276 aa8.2□□□□□ -1.1
VPS4A-201ENST00000254950 CSMD2Q7Z408 3487 aa8.2□□□□□ -1.1
VPS4A-201ENST00000254950 PRO1854Q9UHT4 67 aa8.2□□□□□ -1.1
VPS4A-201ENST00000254950 KMT2BQ9UMN6 2715 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-201ENST00000254950 GIG44P09565 113 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-201ENST00000254950 UBE2D1P51668 147 aa8.19□□□□□ -1.1
VPS4A-201ENST00000254950 CSDC2Q9Y534 153 aaKnown RBP8.19□□□□□ -1.1
VPS4A-201ENST00000254950 LINC01546A6NGU7 62 aa8.19□□□□□ -1.1
VPS4A-201ENST00000254950 LINC00694P0DN24 101 aa8.19□□□□□ -1.1
VPS4A-201ENST00000254950 Q8NAQ8 132 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 NDUFA1O15239 70 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 C12orf74Q32Q52 190 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 MTURNQ8N3F0 131 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 HIVEP1P15822 2718 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 STAB1Q9NY15 2570 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 LINC00959A0A1B0GUT2 108 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 K7ERU9 68 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 CBY1Q9Y3M2 126 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 TRAV8-4A0A0B4J246 113 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 SLC25A20O43772 301 aa8.18□□□□□ -1.1
VPS4A-201ENST00000254950 A0A1B0GWB2 263 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 C9orf118A6NHY6 69 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 MIAQ16674 131 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 MUSTN1Q8IVN3 82 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 K7ERJ3 54 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 FXYD2P54710 66 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 SBSPONQ8IVN8 264 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 AMELXQ99217 191 aa8.17□□□□□ -1.1
VPS4A-201ENST00000254950 CELSR2Q9HCU4 2923 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 A4D1N5 150 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 KRTAP10-11P60412 298 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 CD164L2Q6UWJ8 174 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 Q9UF83 564 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 TRAV13-2A0A0B4J235 113 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 A0A0J9YXY3 114 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 MAPKAPK5-AS1Q8N8E1 139 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 LINC00242Q5T6M2 205 aa8.16□□□□□ -1.1
VPS4A-201ENST00000254950 LURAP1LQ8IV03 231 aa8.15□□□□□ -1.1
VPS4A-201ENST00000254950 IGLV4-60A0A075B6I1 120 aa8.15□□□□□ -1.1
VPS4A-201ENST00000254950 DAND5Q8N907 189 aa8.15□□□□□ -1.1
VPS4A-201ENST00000254950 SPATA3Q8NHX4 192 aa8.15□□□□□ -1.1
VPS4A-201ENST00000254950 NHLRC4P0CG21 123 aaPredicted RBP8.14□□□□□ -1.11
VPS4A-201ENST00000254950 IGLV4-69A0A075B6H9 119 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 SND1-IT1Q9HBX3 110 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 GHRHP01286 108 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 MIR7-3HGQ8N6C7 128 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 NKAPP1Q8N9T2 125 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 ZFAND6Q6FIF0 208 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 NTM-AS1Q6ZSK4 140 aa8.14□□□□□ -1.11
VPS4A-201ENST00000254950 A0A1B0GUV1 79 aa8.13□□□□□ -1.11
VPS4A-201ENST00000254950 EGFEM1PQ0D2K5 195 aa8.13□□□□□ -1.11
VPS4A-201ENST00000254950 ATXN8Q156A1 80 aa8.13□□□□□ -1.11
VPS4A-201ENST00000254950 NSD1Q96L73 2696 aaPredicted RBP8.13□□□□□ -1.11
VPS4A-201ENST00000254950 CFC1BP0CG36 223 aa8.13□□□□□ -1.11
VPS4A-201ENST00000254950 CFC1P0CG37 223 aa8.13□□□□□ -1.11
VPS4A-201ENST00000254950 UBE2V1Q13404 147 aa8.12□□□□□ -1.11
VPS4A-201ENST00000254950 HIGD2BQ4VC39 106 aa8.12□□□□□ -1.11
VPS4A-201ENST00000254950 LYPD5Q6UWN5 251 aa8.12□□□□□ -1.11
VPS4A-201ENST00000254950 UFSP1Q6NVU6 142 aa8.12□□□□□ -1.11
VPS4A-201ENST00000254950 TRBV20-1A0A075B6N2 111 aa8.12□□□□□ -1.11
VPS4A-201ENST00000254950 A8MZ25 164 aa8.12□□□□□ -1.11
VPS4A-201ENST00000254950 NUPR2A6NF83 97 aa8.11□□□□□ -1.11
VPS4A-201ENST00000254950 TTC32Q5I0X7 151 aa8.11□□□□□ -1.11
VPS4A-201ENST00000254950 A0A1W2PPM0 123 aa8.11□□□□□ -1.11
VPS4A-201ENST00000254950 PLAC8L1A1L4L8 177 aa8.11□□□□□ -1.11
VPS4A-201ENST00000254950 WIPF1O43516 503 aa8.11□□□□□ -1.11
VPS4A-201ENST00000254950 ZNF575Q86XF7 245 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 K7EIL1 84 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 GAGE2EQ4V326 116 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 GAGE2DQ9UEU5 116 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 IBA57-AS1B1ANH7 110 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 SPANXB1Q9NS25 103 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms