RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 CDC42SE2Q9NRR3 84 aa13.2□□□□□ -0.3
PDLIM4-201ENST00000253754 WFDC9Q8NEX5 89 aa13.19□□□□□ -0.3
PDLIM4-201ENST00000253754 DAND5Q8N907 189 aa13.19□□□□□ -0.3
PDLIM4-201ENST00000253754 TMEM243Q9BU79 118 aa13.19□□□□□ -0.3
PDLIM4-201ENST00000253754 GTSF1LQ9H1H1 148 aa13.19□□□□□ -0.3
PDLIM4-201ENST00000253754 CSDC2Q9Y534 153 aaKnown RBP13.19□□□□□ -0.3
PDLIM4-201ENST00000253754 ANK2Q01484 3957 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 TCL1BO95988 128 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 SMAGPQ0VAQ4 97 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 UBE2L6O14933 153 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 IGHV3-33P01772 117 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 HERVK_113P63121 156 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 SPATA25Q9BR10 227 aa13.18□□□□□ -0.3
PDLIM4-201ENST00000253754 SMCPP49901 116 aaPredicted RBP13.17□□□□□ -0.3
PDLIM4-201ENST00000253754 A0A0B4J2C4 111 aa13.16□□□□□ -0.3
PDLIM4-201ENST00000253754 MIAQ16674 131 aa13.16□□□□□ -0.3
PDLIM4-201ENST00000253754 MDFIQ99750 246 aa13.16□□□□□ -0.3
PDLIM4-201ENST00000253754 SPANXDQ9BXN6 97 aa13.16□□□□□ -0.3
PDLIM4-201ENST00000253754 SPANXCQ9NY87 97 aa13.16□□□□□ -0.3
PDLIM4-201ENST00000253754 GAGE12HA6NDE8 117 aa13.15□□□□□ -0.3
PDLIM4-201ENST00000253754 SMIM1B2RUZ4 78 aa13.15□□□□□ -0.3
PDLIM4-201ENST00000253754 GAGE6Q13070 117 aa13.15□□□□□ -0.3
PDLIM4-201ENST00000253754 ZNF625Q96I27 306 aaPredicted RBP13.15□□□□□ -0.3
PDLIM4-201ENST00000253754 IGLV5-39A0A0G2JS06 123 aa13.15□□□□□ -0.3
PDLIM4-201ENST00000253754 SCGB1C2P0DMR2 95 aa13.15□□□□□ -0.3
PDLIM4-201ENST00000253754 NDUFA1O15239 70 aa13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 FAM19A3Q7Z5A8 133 aa13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 Q9H8V8 135 aa13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 ERG28Q9UKR5 140 aa13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 X6R8D5 127 aa13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 CFAP161Q6P656 301 aa13.14□□□□□ -0.31
PDLIM4-201ENST00000253754 CMYA5Q8N3K9 4069 aa13.13□□□□□ -0.31
PDLIM4-201ENST00000253754 CKS1BP61024 79 aa13.13□□□□□ -0.31
PDLIM4-201ENST00000253754 SHISA2Q6UWI4 295 aa13.13□□□□□ -0.31
PDLIM4-201ENST00000253754 IGKV3OR2-268A0A0C4DH90 116 aa13.13□□□□□ -0.31
PDLIM4-201ENST00000253754 A0A0U1RRA0 63 aa13.13□□□□□ -0.31
PDLIM4-201ENST00000253754 Q1RN00 199 aa13.13□□□□□ -0.31
PDLIM4-201ENST00000253754 TRAV26-1A0A087WT03 109 aa13.12□□□□□ -0.31
PDLIM4-201ENST00000253754 F5H768 121 aa13.12□□□□□ -0.31
PDLIM4-201ENST00000253754 LYRM7Q5U5X0 104 aa13.12□□□□□ -0.31
PDLIM4-201ENST00000253754 NOTCH1P46531 2555 aa13.12□□□□□ -0.31
PDLIM4-201ENST00000253754 IGLV4-60A0A075B6I1 120 aa13.11□□□□□ -0.31
PDLIM4-201ENST00000253754 TRBV6-8A0A0A6YYG3 113 aa13.11□□□□□ -0.31
PDLIM4-201ENST00000253754 J3QR89 54 aa13.1□□□□□ -0.31
PDLIM4-201ENST00000253754 DEFB4AO15263 64 aa13.1□□□□□ -0.31
PDLIM4-201ENST00000253754 OXLD1Q5BKU9 147 aa13.1□□□□□ -0.31
PDLIM4-201ENST00000253754 CHCHD5Q9BSY4 110 aa13.1□□□□□ -0.31
PDLIM4-201ENST00000253754 WIPF1O43516 503 aa13.09□□□□□ -0.31
PDLIM4-201ENST00000253754 KIR2DL5BQ8NHK3 375 aa13.09□□□□□ -0.31
PDLIM4-201ENST00000253754 DNHD1Q96M86 4753 aa13.09□□□□□ -0.31
PDLIM4-201ENST00000253754 TRBV20-1A0A075B6N2 111 aa13.09□□□□□ -0.31
PDLIM4-201ENST00000253754 LINC00612Q8N6U2 182 aa13.09□□□□□ -0.31
PDLIM4-201ENST00000253754 TIMM17BO60830 172 aa13.08□□□□□ -0.32
PDLIM4-201ENST00000253754 DEFB135Q30KP9 77 aa13.08□□□□□ -0.32
PDLIM4-201ENST00000253754 GYPEP15421 78 aa13.08□□□□□ -0.32
PDLIM4-201ENST00000253754 NBEAL1Q6ZS30 2694 aa13.07□□□□□ -0.32
PDLIM4-201ENST00000253754 MGAM2Q2M2H8 2515 aa13.07□□□□□ -0.32
PDLIM4-201ENST00000253754 TRIAP1O43715 76 aa13.07□□□□□ -0.32
PDLIM4-201ENST00000253754 A0A096LPF7 62 aa13.06□□□□□ -0.32
PDLIM4-201ENST00000253754 H7C423 109 aa13.06□□□□□ -0.32
PDLIM4-201ENST00000253754 FAM222AQ5U5X8 452 aa13.06□□□□□ -0.32
PDLIM4-201ENST00000253754 CIRBPQ14011 172 aaKnown RBP13.04□□□□□ -0.32
PDLIM4-201ENST00000253754 LINC00308Q8TCZ7 52 aa13.04□□□□□ -0.32
PDLIM4-201ENST00000253754 IFITM1P13164 125 aa13.03□□□□□ -0.32
PDLIM4-201ENST00000253754 MEIG1Q5JSS6 88 aa13.03□□□□□ -0.32
PDLIM4-201ENST00000253754 SOSTDC1Q6X4U4 206 aa13.03□□□□□ -0.32
PDLIM4-201ENST00000253754 ATP6V0E2Q8NHE4 81 aa13.03□□□□□ -0.32
PDLIM4-201ENST00000253754 ICOSQ9Y6W8 199 aa13.02□□□□□ -0.32
PDLIM4-201ENST00000253754 C9JAW5 83 aa13.02□□□□□ -0.33
PDLIM4-201ENST00000253754 FOXI1Q12951 378 aa13.02□□□□□ -0.33
PDLIM4-201ENST00000253754 TRBV30A0A0K0K1B3 111 aa13.01□□□□□ -0.33
PDLIM4-201ENST00000253754 SMIM9A6NGZ8 99 aa13.01□□□□□ -0.33
PDLIM4-201ENST00000253754 RPL13AP40429 203 aaKnown RBP13.01□□□□□ -0.33
PDLIM4-201ENST00000253754 TOMM7Q9P0U1 55 aa13.01□□□□□ -0.33
PDLIM4-201ENST00000253754 KRTAP10-11P60412 298 aa13□□□□□ -0.33
PDLIM4-201ENST00000253754 IGHV4-28A0A0C4DH34 117 aa13□□□□□ -0.33
PDLIM4-201ENST00000253754 IGHV4-30-4P0DP06 118 aa13□□□□□ -0.33
PDLIM4-201ENST00000253754 RNF183Q96D59 192 aa13□□□□□ -0.33
PDLIM4-201ENST00000253754 CARD19Q96LW7 228 aa13□□□□□ -0.33
PDLIM4-201ENST00000253754 PRO0255Q9UI72 69 aa13□□□□□ -0.33
PDLIM4-201ENST00000253754 TMEM262E9PQX1 116 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 SLC25A20O43772 301 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 ANKRD29Q8N6D5 301 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 IGHV3OR16-9A0A0B4J2B5 98 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 APOC4P55056 127 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 TEN1Q86WV5 123 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 COX7B2Q8TF08 81 aa12.99□□□□□ -0.33
PDLIM4-201ENST00000253754 ATXN8Q156A1 80 aa12.98□□□□□ -0.33
PDLIM4-201ENST00000253754 CLPSL2Q6UWE3 100 aa12.98□□□□□ -0.33
PDLIM4-201ENST00000253754 C5orf38Q86SI9 138 aa12.98□□□□□ -0.33
PDLIM4-201ENST00000253754 PAX4O43316 350 aa12.97□□□□□ -0.33
PDLIM4-201ENST00000253754 CELA1Q9UNI1 258 aa12.97□□□□□ -0.33
PDLIM4-201ENST00000253754 CLEC2BQ92478 149 aa12.97□□□□□ -0.33
PDLIM4-201ENST00000253754 LYRM9A8MSI8 78 aa12.96□□□□□ -0.33
PDLIM4-201ENST00000253754 LINC01620Q4KN68 170 aa12.96□□□□□ -0.33
PDLIM4-201ENST00000253754 LINC00959A0A1B0GUT2 108 aa12.96□□□□□ -0.34
PDLIM4-201ENST00000253754 HERV-K104P63124 156 aa12.96□□□□□ -0.34
PDLIM4-201ENST00000253754 EGFEM1PQ0D2K5 195 aa12.95□□□□□ -0.34
PDLIM4-201ENST00000253754 XCL1P47992 114 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms