RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ZNF469Q96JG9 3925 aaPredicted RBP13.27□□□□□ -0.28
CPSF3-201ENST00000238112 PLAC8L1A1L4L8 177 aa13.27□□□□□ -0.28
CPSF3-201ENST00000238112 LOC100131303A0A0U1RQF7 123 aa13.27□□□□□ -0.29
CPSF3-201ENST00000238112 TRBV6-4A0A1B0GX49 114 aa13.27□□□□□ -0.29
CPSF3-201ENST00000238112 CRLF1O75462 422 aa13.27□□□□□ -0.29
CPSF3-201ENST00000238112 TRAV26-1A0A087WT03 109 aa13.26□□□□□ -0.29
CPSF3-201ENST00000238112 TRGV4A0A0C4DH28 118 aa13.26□□□□□ -0.29
CPSF3-201ENST00000238112 LINC01006Q8NI28 216 aa13.25□□□□□ -0.29
CPSF3-201ENST00000238112 SHISA2Q6UWI4 295 aa13.25□□□□□ -0.29
CPSF3-201ENST00000238112 C15orf53Q8NAA6 179 aa13.25□□□□□ -0.29
CPSF3-201ENST00000238112 ITPR3Q14573 2671 aa13.25□□□□□ -0.29
CPSF3-201ENST00000238112 APCP25054 2843 aa13.24□□□□□ -0.29
CPSF3-201ENST00000238112 DEFB121Q5J5C9 76 aa13.24□□□□□ -0.29
CPSF3-201ENST00000238112 FAM110AQ9BQ89 295 aa13.24□□□□□ -0.29
CPSF3-201ENST00000238112 IGLV1-51P01701 117 aa13.23□□□□□ -0.29
CPSF3-201ENST00000238112 FAM240AA0A1B0GVK7 77 aa13.23□□□□□ -0.29
CPSF3-201ENST00000238112 GAGE6Q13070 117 aa13.23□□□□□ -0.29
CPSF3-201ENST00000238112 OVOL2Q9BRP0 275 aa13.23□□□□□ -0.29
CPSF3-201ENST00000238112 IGKV3OR2-268A0A0C4DH90 116 aa13.22□□□□□ -0.29
CPSF3-201ENST00000238112 COX7B2Q8TF08 81 aa13.22□□□□□ -0.29
CPSF3-201ENST00000238112 PPDPFQ9H3Y8 114 aa13.22□□□□□ -0.29
CPSF3-201ENST00000238112 NOTCH3Q9UM47 2321 aa13.22□□□□□ -0.29
CPSF3-201ENST00000238112 C16orf95Q9H693 158 aa13.22□□□□□ -0.29
CPSF3-201ENST00000238112 C19orf73Q9NVV2 129 aa13.22□□□□□ -0.29
CPSF3-201ENST00000238112 CSNK1G2-AS1Q8NCQ2 148 aa13.21□□□□□ -0.29
CPSF3-201ENST00000238112 Q6Q795 121 aa13.21□□□□□ -0.3
CPSF3-201ENST00000238112 TOMM7Q9P0U1 55 aa13.21□□□□□ -0.3
CPSF3-201ENST00000238112 NF1P21359 2839 aa13.2□□□□□ -0.3
CPSF3-201ENST00000238112 RNASE1P07998 156 aaKnown RBP13.2□□□□□ -0.3
CPSF3-201ENST00000238112 TTC32Q5I0X7 151 aa13.2□□□□□ -0.3
CPSF3-201ENST00000238112 C2CD3Q4AC94 2353 aa13.19□□□□□ -0.3
CPSF3-201ENST00000238112 MRPL23Q16540 153 aaKnown RBP13.19□□□□□ -0.3
CPSF3-201ENST00000238112 CHCHD5Q9BSY4 110 aa13.19□□□□□ -0.3
CPSF3-201ENST00000238112 TRBV6-8A0A0A6YYG3 113 aa13.19□□□□□ -0.3
CPSF3-201ENST00000238112 PLA2G2AP14555 144 aa13.19□□□□□ -0.3
CPSF3-201ENST00000238112 TRAV13-2A0A0B4J235 113 aa13.18□□□□□ -0.3
CPSF3-201ENST00000238112 TRACP01848 142 aa13.18□□□□□ -0.3
CPSF3-201ENST00000238112 NDUFV3P56181 108 aaKnown RBP13.18□□□□□ -0.3
CPSF3-201ENST00000238112 FHL2Q14192 279 aa13.18□□□□□ -0.3
CPSF3-201ENST00000238112 MIR7-3HGQ8N6C7 128 aa13.18□□□□□ -0.3
CPSF3-201ENST00000238112 CCDC168Q8NDH2 2452 aa13.18□□□□□ -0.3
CPSF3-201ENST00000238112 IGLV4-60A0A075B6I1 120 aa13.17□□□□□ -0.3
CPSF3-201ENST00000238112 CRPP02741 224 aa13.17□□□□□ -0.3
CPSF3-201ENST00000238112 PF4P02776 101 aa13.17□□□□□ -0.3
CPSF3-201ENST00000238112 JMJD1CQ15652 2540 aa13.17□□□□□ -0.3
CPSF3-201ENST00000238112 HIST2H2BCQ6DN03 193 aa13.17□□□□□ -0.3
CPSF3-201ENST00000238112 CUBNO60494 3623 aa13.16□□□□□ -0.3
CPSF3-201ENST00000238112 FLNAP21333 2647 aaKnown RBP13.16□□□□□ -0.3
CPSF3-201ENST00000238112 SETXQ7Z333 2677 aaKnown RBP13.16□□□□□ -0.3
CPSF3-201ENST00000238112 FAM222AQ5U5X8 452 aa13.16□□□□□ -0.3
CPSF3-201ENST00000238112 LINC00158P58513 81 aa13.15□□□□□ -0.3
CPSF3-201ENST00000238112 SND1-IT1Q9HBX3 110 aa13.15□□□□□ -0.3
CPSF3-201ENST00000238112 SETD2Q9BYW2 2564 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-201ENST00000238112 IGHV3OR16-9A0A0B4J2B5 98 aa13.14□□□□□ -0.31
CPSF3-201ENST00000238112 BAALC-AS2P0C853 105 aa13.14□□□□□ -0.31
CPSF3-201ENST00000238112 NHLRC4P0CG21 123 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-201ENST00000238112 KRTAP1-1Q07627 177 aa13.13□□□□□ -0.31
CPSF3-201ENST00000238112 FAM218AQ96MZ4 157 aa13.13□□□□□ -0.31
CPSF3-201ENST00000238112 ACYP1P07311 99 aa13.13□□□□□ -0.31
CPSF3-201ENST00000238112 RPL28P46779 137 aaKnown RBP13.13□□□□□ -0.31
CPSF3-201ENST00000238112 NIPBLQ6KC79 2804 aaeCLIP13.13□□□□□ -0.31
CPSF3-201ENST00000238112 A0A087WZ39 114 aa13.12□□□□□ -0.31
CPSF3-201ENST00000238112 DEFB130BP0DP73 79 aa13.12□□□□□ -0.31
CPSF3-201ENST00000238112 DEFB130AP0DP74 79 aa13.12□□□□□ -0.31
CPSF3-201ENST00000238112 LINC00337Q8N6G1 96 aa13.12□□□□□ -0.31
CPSF3-201ENST00000238112 NBPF19A0A087WUL8 3843 aa13.11□□□□□ -0.31
CPSF3-201ENST00000238112 IGKV2-28A0A075B6P5 120 aa13.11□□□□□ -0.31
CPSF3-201ENST00000238112 IGKV2D-28P01615 120 aa13.11□□□□□ -0.31
CPSF3-201ENST00000238112 C5orf38Q86SI9 138 aa13.11□□□□□ -0.31
CPSF3-201ENST00000238112 IBA57-AS1B1ANH7 110 aa13.1□□□□□ -0.31
CPSF3-201ENST00000238112 LINC00959A0A1B0GUT2 108 aa13.08□□□□□ -0.32
CPSF3-201ENST00000238112 PFN2P35080 140 aa13.08□□□□□ -0.32
CPSF3-201ENST00000238112 CCL18P55774 89 aa13.08□□□□□ -0.32
CPSF3-201ENST00000238112 KIR2DL5BQ8NHK3 375 aa13.07□□□□□ -0.32
CPSF3-201ENST00000238112 Q9HAA7 133 aa13.07□□□□□ -0.32
CPSF3-201ENST00000238112 GYPEP15421 78 aa13.06□□□□□ -0.32
CPSF3-201ENST00000238112 HILS1P60008 231 aa13.06□□□□□ -0.32
CPSF3-201ENST00000238112 SMIM11BQ8TCY0 68 aa13.06□□□□□ -0.32
CPSF3-201ENST00000238112 TRBV7-7A0A0K0K1E9 115 aa13.06□□□□□ -0.32
CPSF3-201ENST00000238112 DNAL4O96015 105 aa13.06□□□□□ -0.32
CPSF3-201ENST00000238112 MALP21145 153 aa13.05□□□□□ -0.32
CPSF3-201ENST00000238112 C6orf226Q5I0X4 101 aa13.05□□□□□ -0.32
CPSF3-201ENST00000238112 INAFM2P0DMQ5 153 aa13.05□□□□□ -0.32
CPSF3-201ENST00000238112 PAX4O43316 350 aa13.04□□□□□ -0.32
CPSF3-201ENST00000238112 C11orf68Q9H3H3 251 aaKnown RBP13.04□□□□□ -0.32
CPSF3-201ENST00000238112 C22orf24Q9Y442 160 aa13.04□□□□□ -0.32
CPSF3-201ENST00000238112 B5MCH6 92 aa13.04□□□□□ -0.32
CPSF3-201ENST00000238112 XCL1P47992 114 aa13.04□□□□□ -0.32
CPSF3-201ENST00000238112 SS18Q15532 418 aa13.04□□□□□ -0.32
CPSF3-201ENST00000238112 LINC00612Q8N6U2 182 aa13.03□□□□□ -0.32
CPSF3-201ENST00000238112 H0YGX0 51 aa13.02□□□□□ -0.32
CPSF3-201ENST00000238112 MTORP42345 2549 aa13.02□□□□□ -0.33
CPSF3-201ENST00000238112 A0A087WYN8 130 aa13.02□□□□□ -0.33
CPSF3-201ENST00000238112 ACANP16112 2415 aa13.02□□□□□ -0.33
CPSF3-201ENST00000238112 CCDC179H3BU77 68 aa13.01□□□□□ -0.33
CPSF3-201ENST00000238112 A0A1B0GUV1 79 aa13.01□□□□□ -0.33
CPSF3-201ENST00000238112 LINC00643Q86TS7 51 aa13.01□□□□□ -0.33
CPSF3-201ENST00000238112 OR13C6PQ8NH95 151 aa13.01□□□□□ -0.33
CPSF3-201ENST00000238112 SMCR5Q8TEV8 140 aa13.01□□□□□ -0.33
CPSF3-201ENST00000238112 IMUPQ9GZP8 106 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms