RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 TRRAPQ9Y4A5 3859 aa12.09□□□□□ -0.47
VRK1-201ENST00000216639 SMIM1B2RUZ4 78 aa12.08□□□□□ -0.47
VRK1-201ENST00000216639 IGKV3OR2-268A0A0C4DH90 116 aa12.08□□□□□ -0.48
VRK1-201ENST00000216639 NDUFA1O15239 70 aa12.08□□□□□ -0.48
VRK1-201ENST00000216639 RBX1P62877 108 aa12.08□□□□□ -0.48
VRK1-201ENST00000216639 FBN1P35555 2871 aaKnown RBP12.08□□□□□ -0.48
VRK1-201ENST00000216639 GTF2H5Q6ZYL4 71 aa12.07□□□□□ -0.48
VRK1-201ENST00000216639 A0A1W2PPM0 123 aa12.06□□□□□ -0.48
VRK1-201ENST00000216639 FABP2P12104 132 aa12.06□□□□□ -0.48
VRK1-201ENST00000216639 RPL24P83731 157 aaKnown RBP12.06□□□□□ -0.48
VRK1-201ENST00000216639 GAGE10A6NGK3 116 aa12.06□□□□□ -0.48
VRK1-201ENST00000216639 CCL25O15444 150 aa12.06□□□□□ -0.48
VRK1-201ENST00000216639 NAA38Q9BRA0 125 aaKnown RBP12.06□□□□□ -0.48
VRK1-201ENST00000216639 TIMM17BO60830 172 aa12.05□□□□□ -0.48
VRK1-201ENST00000216639 CIRBPQ14011 172 aaKnown RBP12.05□□□□□ -0.48
VRK1-201ENST00000216639 SS18Q15532 418 aa12.05□□□□□ -0.48
VRK1-201ENST00000216639 LINC00959A0A1B0GUT2 108 aa12.04□□□□□ -0.48
VRK1-201ENST00000216639 IGLL5B9A064 214 aa12.04□□□□□ -0.48
VRK1-201ENST00000216639 SPANXDQ9BXN6 97 aa12.04□□□□□ -0.48
VRK1-201ENST00000216639 SPANXCQ9NY87 97 aa12.04□□□□□ -0.48
VRK1-201ENST00000216639 H3BNG1 76 aa12.03□□□□□ -0.48
VRK1-201ENST00000216639 LELP1Q5T871 98 aa12.03□□□□□ -0.48
VRK1-201ENST00000216639 Q9H8V8 135 aa12.03□□□□□ -0.48
VRK1-201ENST00000216639 MUSTN1Q8IVN3 82 aa12.03□□□□□ -0.48
VRK1-201ENST00000216639 LITAFQ99732 161 aa12.03□□□□□ -0.48
VRK1-201ENST00000216639 K7EP34 96 aa12.02□□□□□ -0.49
VRK1-201ENST00000216639 APOMO95445 188 aa12.02□□□□□ -0.49
VRK1-201ENST00000216639 HERV-K104P63124 156 aa12.02□□□□□ -0.49
VRK1-201ENST00000216639 SPCS1Q9Y6A9 102 aa12.02□□□□□ -0.49
VRK1-201ENST00000216639 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.01□□□□□ -0.49
VRK1-201ENST00000216639 IGHV3OR16-9A0A0B4J2B5 98 aa12.01□□□□□ -0.49
VRK1-201ENST00000216639 PRSS2P07478 247 aa12.01□□□□□ -0.49
VRK1-201ENST00000216639 MIAQ16674 131 aa12.01□□□□□ -0.49
VRK1-201ENST00000216639 A0A087WZ39 114 aa12□□□□□ -0.49
VRK1-201ENST00000216639 A0A0J9YWU9 116 aa12□□□□□ -0.49
VRK1-201ENST00000216639 A4D1N5 150 aa12□□□□□ -0.49
VRK1-201ENST00000216639 PGPEP1Q9NXJ5 209 aa12□□□□□ -0.49
VRK1-201ENST00000216639 NBEAL2Q6ZNJ1 2754 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 ANGP03950 147 aaKnown RBP11.99□□□□□ -0.49
VRK1-201ENST00000216639 CFC1BP0CG36 223 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 CFC1P0CG37 223 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 IFITM1P13164 125 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 Q6ZTC4 211 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 COX7B2Q8TF08 81 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 SPATA25Q9BR10 227 aa11.99□□□□□ -0.49
VRK1-201ENST00000216639 ADAMTSL4-AS1Q5T5F5 129 aa11.98□□□□□ -0.49
VRK1-201ENST00000216639 C11orf45Q8TAV5 145 aa11.98□□□□□ -0.49
VRK1-201ENST00000216639 COPS9Q8WXC6 57 aa11.98□□□□□ -0.49
VRK1-201ENST00000216639 ZNF625Q96I27 306 aaPredicted RBP11.98□□□□□ -0.49
VRK1-201ENST00000216639 LINC00269Q8N2A0 174 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 PRO1854Q9UHT4 67 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 A0A0B4J2C4 111 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 XCL1P47992 114 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 MEIG1Q5JSS6 88 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 KPRPQ5T749 579 aaPredicted RBP11.97□□□□□ -0.49
VRK1-201ENST00000216639 LYPD5Q6UWN5 251 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 C5orf38Q86SI9 138 aa11.97□□□□□ -0.49
VRK1-201ENST00000216639 REG3AQ06141 175 aa11.96□□□□□ -0.49
VRK1-201ENST00000216639 SFTA2Q6UW10 78 aa11.96□□□□□ -0.49
VRK1-201ENST00000216639 CLPSL2Q6UWE3 100 aa11.96□□□□□ -0.49
VRK1-201ENST00000216639 LINC01561Q8N1V8 128 aa11.96□□□□□ -0.49
VRK1-201ENST00000216639 TOMM7Q9P0U1 55 aa11.96□□□□□ -0.49
VRK1-201ENST00000216639 STAB1Q9NY15 2570 aa11.95□□□□□ -0.5
VRK1-201ENST00000216639 TSPAN13O95857 204 aa11.94□□□□□ -0.5
VRK1-201ENST00000216639 DEFB121Q5J5C9 76 aa11.94□□□□□ -0.5
VRK1-201ENST00000216639 LYRM7Q5U5X0 104 aa11.94□□□□□ -0.5
VRK1-201ENST00000216639 K7EIL1 84 aa11.94□□□□□ -0.5
VRK1-201ENST00000216639 PRB2P02812 416 aaPredicted RBP11.94□□□□□ -0.5
VRK1-201ENST00000216639 NANOS2P60321 138 aaKnown RBP11.94□□□□□ -0.5
VRK1-201ENST00000216639 CD164L2Q6UWJ8 174 aa11.94□□□□□ -0.5
VRK1-201ENST00000216639 TM2D3Q9BRN9 247 aa11.93□□□□□ -0.5
VRK1-201ENST00000216639 DEFB131BA0A096LNP1 70 aa11.92□□□□□ -0.5
VRK1-201ENST00000216639 NPC2P61916 151 aa11.91□□□□□ -0.5
VRK1-201ENST00000216639 CHCHD10Q8WYQ3 142 aaPredicted RBP11.91□□□□□ -0.5
VRK1-201ENST00000216639 CMYA5Q8N3K9 4069 aa11.91□□□□□ -0.5
VRK1-201ENST00000216639 COX7A2LO14548 114 aa11.91□□□□□ -0.5
VRK1-201ENST00000216639 Q8N3U1 123 aa11.91□□□□□ -0.5
VRK1-201ENST00000216639 DAND5Q8N907 189 aa11.91□□□□□ -0.5
VRK1-201ENST00000216639 ERG28Q9UKR5 140 aa11.91□□□□□ -0.5
VRK1-201ENST00000216639 C6orf226Q5I0X4 101 aa11.9□□□□□ -0.5
VRK1-201ENST00000216639 LINC00308Q8TCZ7 52 aa11.9□□□□□ -0.5
VRK1-201ENST00000216639 LOC107984156A0A0G2JMH3 177 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 A0A0U1RRA0 63 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 ARL17AQ8IVW1 177 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 Q8IZM0 81 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 MRAPQ8TCY5 172 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 IGHV3-33P01772 117 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 MALP21145 153 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 MDFIQ99750 246 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 PPDPFQ9H3Y8 114 aa11.89□□□□□ -0.51
VRK1-201ENST00000216639 IGLV10-54A0A075B6I4 117 aa11.88□□□□□ -0.51
VRK1-201ENST00000216639 PRR34Q9NV39 138 aa11.88□□□□□ -0.51
VRK1-201ENST00000216639 KLK12Q9UKR0 248 aa11.88□□□□□ -0.51
VRK1-201ENST00000216639 EIF4EBP3O60516 100 aaPredicted RBP11.87□□□□□ -0.51
VRK1-201ENST00000216639 Q1RN00 199 aa11.87□□□□□ -0.51
VRK1-201ENST00000216639 TRAV10A0A0B4J240 114 aa11.86□□□□□ -0.51
VRK1-201ENST00000216639 IBA57-AS1B1ANH7 110 aa11.86□□□□□ -0.51
VRK1-201ENST00000216639 CRPP02741 224 aa11.86□□□□□ -0.51
VRK1-201ENST00000216639 PSMB2P49721 201 aa11.86□□□□□ -0.51
VRK1-201ENST00000216639 SCGB1C2P0DMR2 95 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms