RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-229	ENST00000641891	NTM-AS1	Q6ZSK4	140 aa		12.09	□□□□□ -0.47
PHGDH-229	ENST00000641891	RPL36AL	Q969Q0	106 aa	Known RBP	12.09	□□□□□ -0.47
PHGDH-229	ENST00000641891	TINCR	A0A1B0GVN0	87 aa		12.09	□□□□□ -0.47
PHGDH-229	ENST00000641891		A8MZ25	164 aa		12.09	□□□□□ -0.47
PHGDH-229	ENST00000641891	RNF151	Q2KHN1	245 aa		12.09	□□□□□ -0.47
PHGDH-229	ENST00000641891	TRGV2	A0A075B6R0	118 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	SPINK8	P0C7L1	97 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	C1QTNF4	Q9BXJ3	329 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	TRBV10-1	A0A0K0K1A3	114 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	LOC100131303	A0A0U1RQF7	123 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	UBE2D3	P61077	147 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	UBE2D2	P62837	147 aa		12.08	□□□□□ -0.48
PHGDH-229	ENST00000641891	NOTCH3	Q9UM47	2321 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891	DGAT2L7P	Q6IED9	249 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891	SFTA2	Q6UW10	78 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891	IGHV1-58	A0A0C4DH39	117 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891		A0A0J9YXY3	114 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891		H3BMG7	143 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891	TSPAN13	O95857	204 aa		12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	12.06	□□□□□ -0.48
PHGDH-229	ENST00000641891	CFC1B	P0CG36	223 aa		12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	CFC1	P0CG37	223 aa		12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	DAZ4	Q86SG3	579 aa	Known RBP	12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	GEMIN7	Q9H840	131 aa	Known RBP	12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	DAZ3	Q9NR90	486 aa	Known RBP	12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	VSIG2	Q96IQ7	327 aa		12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	OVOL2	Q9BRP0	275 aa		12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	CDKN2A-AS1	Q9UH64	79 aa		12.05	□□□□□ -0.48
PHGDH-229	ENST00000641891	COX6A2	Q02221	97 aa		12.04	□□□□□ -0.48
PHGDH-229	ENST00000641891	SBSPON	Q8IVN8	264 aa		12.03	□□□□□ -0.48
PHGDH-229	ENST00000641891	MTURN	Q8N3F0	131 aa		12.03	□□□□□ -0.48
PHGDH-229	ENST00000641891	EIF4EBP3	O60516	100 aa	Predicted RBP	12.03	□□□□□ -0.48
PHGDH-229	ENST00000641891		A4D1N5	150 aa		12.02	□□□□□ -0.48
PHGDH-229	ENST00000641891	MUSTN1	Q8IVN3	82 aa		12.02	□□□□□ -0.48
PHGDH-229	ENST00000641891	NDUFA12	Q9UI09	145 aa		12.02	□□□□□ -0.48
PHGDH-229	ENST00000641891	TRGV4	A0A0C4DH28	118 aa		12.02	□□□□□ -0.49
PHGDH-229	ENST00000641891	CRLF1	O75462	422 aa		12.02	□□□□□ -0.49
PHGDH-229	ENST00000641891	LITAF	Q99732	161 aa		12.02	□□□□□ -0.49
PHGDH-229	ENST00000641891	TMEM238	C9JI98	176 aa		12.01	□□□□□ -0.49
PHGDH-229	ENST00000641891	WFDC2	Q14508	124 aa		12.01	□□□□□ -0.49
PHGDH-229	ENST00000641891	LINC00242	Q5T6M2	205 aa		12.01	□□□□□ -0.49
PHGDH-229	ENST00000641891	CBY1	Q9Y3M2	126 aa		12.01	□□□□□ -0.49
PHGDH-229	ENST00000641891	NOTCH2	Q04721	2471 aa		12	□□□□□ -0.49
PHGDH-229	ENST00000641891	IGLV5-45	A0A087WSX0	123 aa		12	□□□□□ -0.49
PHGDH-229	ENST00000641891	LOC107984156	A0A0G2JMH3	177 aa		12	□□□□□ -0.49
PHGDH-229	ENST00000641891		K7ERU9	68 aa		12	□□□□□ -0.49
PHGDH-229	ENST00000641891	TIRAP	P58753	221 aa		12	□□□□□ -0.49
PHGDH-229	ENST00000641891	ARL17A	Q8IVW1	177 aa		12	□□□□□ -0.49
PHGDH-229	ENST00000641891	TRAV13-1	A0A0B4J241	112 aa		11.99	□□□□□ -0.49
PHGDH-229	ENST00000641891	TRBV6-4	A0A1B0GX49	114 aa		11.99	□□□□□ -0.49
PHGDH-229	ENST00000641891	FHL2	Q14192	279 aa		11.99	□□□□□ -0.49
PHGDH-229	ENST00000641891	ADAMTSL4-AS1	Q5T5F5	129 aa		11.99	□□□□□ -0.49
PHGDH-229	ENST00000641891	TMEM101	Q96IK0	257 aa		11.99	□□□□□ -0.49
PHGDH-229	ENST00000641891	DEFB130B	P0DP73	79 aa		11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	DEFB130A	P0DP74	79 aa		11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	TMEM243	Q9BU79	118 aa		11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	CSDC2	Q9Y534	153 aa	Known RBP	11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	ZFAND6	Q6FIF0	208 aa		11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	CDC42SE2	Q9NRR3	84 aa		11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	PRO1854	Q9UHT4	67 aa		11.98	□□□□□ -0.49
PHGDH-229	ENST00000641891	VWF	P04275	2813 aa		11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	RPL24	P83731	157 aa	Known RBP	11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	VPS25	Q9BRG1	176 aa		11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	GTSF1L	Q9H1H1	148 aa		11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	PRO0461	Q9UI25	63 aa		11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	FN1	P02751	2386 aa	Known RBP	11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	C2CD3	Q4AC94	2353 aa		11.97	□□□□□ -0.49
PHGDH-229	ENST00000641891	UBE2L6	O14933	153 aa		11.96	□□□□□ -0.49
PHGDH-229	ENST00000641891	PSMB2	P49721	201 aa		11.96	□□□□□ -0.49
PHGDH-229	ENST00000641891	TEX48	A0A1B0GUV7	120 aa		11.96	□□□□□ -0.5
PHGDH-229	ENST00000641891		F8W1H4	67 aa		11.96	□□□□□ -0.5
PHGDH-229	ENST00000641891	NPC2	P61916	151 aa		11.96	□□□□□ -0.5
PHGDH-229	ENST00000641891	HERVK_113	P63121	156 aa		11.96	□□□□□ -0.5
PHGDH-229	ENST00000641891		X6R8D5	127 aa		11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891	NSD1	Q96L73	2696 aa	Predicted RBP	11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891		G3V4G9	280 aa		11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891		H7C2G1	150 aa		11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891	PRSS2	P07478	247 aa		11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891	C9orf66	Q5T8R8	295 aa		11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891	SVIP	Q8NHG7	77 aa		11.95	□□□□□ -0.5
PHGDH-229	ENST00000641891	CIDEA	O60543	219 aa		11.94	□□□□□ -0.5
PHGDH-229	ENST00000641891	GAGE6	Q13070	117 aa		11.94	□□□□□ -0.5
PHGDH-229	ENST00000641891	SH2D6	Q7Z4S9	175 aa		11.94	□□□□□ -0.5
PHGDH-229	ENST00000641891	FAM19A3	Q7Z5A8	133 aa		11.94	□□□□□ -0.5
PHGDH-229	ENST00000641891	SPANXD	Q9BXN6	97 aa		11.94	□□□□□ -0.5
PHGDH-229	ENST00000641891	SPANXC	Q9NY87	97 aa		11.94	□□□□□ -0.5
PHGDH-229	ENST00000641891		A0A0B4J2C4	111 aa		11.93	□□□□□ -0.5
PHGDH-229	ENST00000641891	IGLV5-39	A0A0G2JS06	123 aa		11.93	□□□□□ -0.5
PHGDH-229	ENST00000641891	SMIM1	B2RUZ4	78 aa		11.93	□□□□□ -0.5
PHGDH-229	ENST00000641891	IGHV3-33	P01772	117 aa		11.93	□□□□□ -0.5
PHGDH-229	ENST00000641891	DAND5	Q8N907	189 aa		11.93	□□□□□ -0.5
PHGDH-229	ENST00000641891	NDUFA1	O15239	70 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	INSL3	P51460	131 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	MIA	Q16674	131 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	TCL1B	O95988	128 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	ETDB	Q3ZM63	59 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	KIR2DL5B	Q8NHK3	375 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	TENM1	Q9UKZ4	2725 aa		11.92	□□□□□ -0.5
PHGDH-229	ENST00000641891	LINC00612	Q8N6U2	182 aa		11.91	□□□□□ -0.5
PHGDH-229	ENST00000641891	IGLV4-60	A0A075B6I1	120 aa		11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms